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Haidong Yi
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dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation
L Huang, H Zhang, P Wu, S Entwistle, X Li, T Yohe, H Yi, Z Yang, Y Yin
Nucleic Acids Research 46 (D1), D516-D521, 2018
2252018
dbCAN-PUL: a database of experimentally characterized CAZyme gene clusters and their substrates
C Ausland, J Zheng, H Yi, B Yang, T Li, X Feng, B Zheng, Y Yin
Nucleic Acids Research 49 (D1), D523-D528, 2021
692021
AcrFinder: genome mining anti-CRISPR operons in prokaryotes and their viruses
H Yi, L Huang, B Yang, J Gomez, H Zhang, Y Yin
Nucleic acids research 48 (W1), W358-W365, 2020
482020
AcrDB: a database of anti-CRISPR operons in prokaryotes and viruses
L Huang, B Yang, H Yi, A Asif, J Wang, T Lithgow, H Zhang, FAA Minhas, ...
Nucleic Acids Research 49 (D1), D622-D629, 2021
322021
Exchangeable neural ode for set modeling
Y Li, H Yi, C Bender, S Shan, JB Oliva
Advances in Neural Information Processing Systems 33, 6936-6946, 2020
272020
Detecting hidden batch factors through data-adaptive adjustment for biological effects
H Yi, AT Raman, H Zhang, GI Allen, Z Liu
Bioinformatics 34 (7), 1141-1147, 2018
192018
CytoSet: Predicting clinical outcomes via set-modeling of cytometry data
H Yi, N Stanley
ACM International Conference on Bioinformatics, Computational Biology and …, 2021
82021
Transparent single-cell set classification with kernel mean embeddings
S Shan, VA Baskaran, H Yi, J Ranek, N Stanley, JB Oliva
Proceedings of the 13th ACM International Conference on Bioinformatics …, 2022
52022
COBRAC: a fast implementation of convex biclustering with compression
H Yi, L Huang, G Mishne, EC Chi
Bioinformatics 37 (20), 3667-3669, 2021
52021
Scalable algorithms for convex clustering
W Zhou, H Yi, G Mishne, E Chi
2021 IEEE Data Science and Learning Workshop (DSLW), 1-6, 2021
52021
Benchmarking differential abundance methods for finding condition-specific prototypical cells in multi-sample single-cell datasets
H Yi, A Plotkin, N Stanley
Genome Biology 25 (1), 9, 2024
22024
Sequential quadratic programming-based fast path planning algorithm subject to no-fly zone constraints
W Liu, S Ma, M Sun, H Yi, Z Wang, Z Chen
Engineering Optimization 48 (8), 1401-1418, 2016
22016
GDASC: a GPU parallel-based web server for detecting hidden batch factors
X Wang, H Yi, J Wang, Z Liu, Y Yin, H Zhang
Bioinformatics 36 (14), 4211-4213, 2020
12020
Carbohydrate-active enzyme annotation in microbiomes using dbCAN
J Zheng, L Huang, H Yi, Y Yan, X Zhang, J Akresi, Y Yin
bioRxiv, 2024.01. 10.575125, 2024
2024
scLKME: A Landmark-based Approach for Generating Multi-cellular Sample Embeddings from Single-cell Data
H Yi, N Stanley
bioRxiv, 2023
2023
CytoEMD: detecting and visualizing between-sample variation in relation to phenotype with earth mover's distance
H Yi, N Stanley
Proceedings of the 13th ACM International Conference on Bioinformatics …, 2022
2022
Interpretable Single-Cell Set Classification with Kernel Mean Embeddings
S Shan, V Baskaran, H Yi, J Ranek, N Stanley, J Oliva
arXiv preprint arXiv:2201.07322, 2022
2022
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Artikelen 1–17