S Joshua Swamidass

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Pierre BaldiProfessor, University of California, IrvineGeverifieerd e-mailadres voor ics.uci.edu
Matthew MatlockMD PhD student, Washington University in St LouisGeverifieerd e-mailadres voor wustl.edu
Liva RalaivolaCriteo AI Labs (on leave from Aix-Marseille Université)Geverifieerd e-mailadres voor criteo.com
Hiroto SaigoKyushu UniversityGeverifieerd e-mailadres voor inf.kyushu-u.ac.jp
Na Le DangMD PhD Candidate at Washington University in St Louis School of MedicineGeverifieerd e-mailadres voor wustl.edu
Tyler B. HughesSenior Data Scientist at Integral Ad Science. PhD Computational Systems Biology from WUSTLGeverifieerd e-mailadres voor wustl.edu
Jonathan H ChenStanford Department of MedicineGeverifieerd e-mailadres voor stanford.edu
Chloé-Agathe AzencottMines ParisTechGeverifieerd e-mailadres voor mines-paristech.fr
Obi L. GriffithAssociate Professor, Washington University School of MedicineGeverifieerd e-mailadres voor wustl.edu
Atul J. ButteDirector, Bakar Computational Health Sciences Institute, University of California, San FranciscoGeverifieerd e-mailadres voor ucsf.edu
Zhiyong LuDeputy Director for Literature Search, NCBI; Senior Investigator, NCBI-NLMGeverifieerd e-mailadres voor nih.gov
Malachi GriffithAssociate Professor, Medicine, Washington University School of MedicineGeverifieerd e-mailadres voor wustl.edu
Bin ChenMSUGeverifieerd e-mailadres voor hc.msu.edu
Joshua A. BittkerVertex pharmaceuticalsGeverifieerd e-mailadres voor vrtx.com
Runjun D KumarResident Physician of Pediatrics and Genetics, Baylor College of MedicineGeverifieerd e-mailadres voor bcm.edu
Paul A. Clemons, Ph.D.Institute Scientist, Computational Chemical Biology, Broad InstituteGeverifieerd e-mailadres voor broadinstitute.org
Nicole E. BodycombePrincipal Scientist, PfizerGeverifieerd e-mailadres voor Pfizer.com
Pankaj AgarwalChief Computational Biologist, BioInfiGeverifieerd e-mailadres voor gsk.com
Erik LinsteadAssociate Professor, Fowler School of Engineering, Chapman UniversityGeverifieerd e-mailadres voor chapman.edu
Kenneth DailyPostdoctoral fellow, National Institutes of Health, National Cancer Institute, Center for Cancer Research, Dermatology BranchGeverifieerd e-mailadres voor mail.nih.gov

S Joshua Swamidass

Associate Professor of Pathology and Immunology, Washington University in St. Louis

Geverifieerd e-mailadres voor wustl.edu - Homepage

Drug Metabolism Bioactivation Chemical Informatics Drug Design High-throughput Screening


Titel Sorteren op citaties Sorteren op jaar Sorteren op titel	Geciteerd door Geciteerd door	Jaar
Opportunities and obstacles for deep learning in biology and medicine T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ... Journal of The Royal Society Interface 15 (141), 20170387, 2018	811	2018
Graph kernels for chemical informatics L Ralaivola, SJ Swamidass, H Saigo, P Baldi Neural networks 18 (8), 1093-1110, 2005	470	2005
A survey of current trends in computational drug repositioning J Li, S Zheng, B Chen, AJ Butte, SJ Swamidass, Z Lu Briefings in bioinformatics 17 (1), 2-12, 2016	315	2016
Kernels for small molecules and the prediction of mutagenicity, toxicity and anti-cancer activity SJ Swamidass, J Chen, J Bruand, P Phung, L Ralaivola, P Baldi Bioinformatics 21 (suppl_1), i359-i368, 2005	214	2005
ChemDB: a public database of small molecules and related chemoinformatics resources J Chen, SJ Swamidass, Y Dou, J Bruand, P Baldi Bioinformatics 21 (22), 4133-4139, 2005	187	2005
Open source drug discovery with the malaria box compound collection for neglected diseases and beyond WC Van Voorhis, JH Adams, R Adelfio, V Ahyong, MH Akabas, P Alano, ... PLoS pathogens 12 (7), e1005763, 2016	181	2016
XenoSite: accurately predicting CYP-mediated sites of metabolism with neural networks J Zaretzki, M Matlock, SJ Swamidass Journal of chemical information and modeling 53 (12), 3373-3383, 2013	133	2013
Structure-based inhibitor design of AccD5, an essential acyl-CoA carboxylase carboxyltransferase domain of Mycobacterium tuberculosis TW Lin, MM Melgar, D Kurth, SJ Swamidass, J Purdon, T Tseng, G Gago, ... Proceedings of the National Academy of Sciences 103 (9), 3072-3077, 2006	122	2006
ChemDB update—full-text search and virtual chemical space JH Chen, E Linstead, SJ Swamidass, D Wang, P Baldi Bioinformatics 23 (17), 2348-2351, 2007	117	2007
A CROC stronger than ROC: measuring, visualizing and optimizing early retrieval SJ Swamidass, CA Azencott, K Daily, P Baldi Bioinformatics 26 (10), 1348-1356, 2010	111	2010
Modeling epoxidation of drug-like molecules with a deep machine learning network TB Hughes, GP Miller, SJ Swamidass ACS central science 1 (4), 168-180, 2015	105	2015
Mathematical correction for fingerprint similarity measures to improve chemical retrieval SJ Swamidass, P Baldi Journal of chemical information and modeling 47 (3), 952-964, 2007	96	2007
Bounds and algorithms for fast exact searches of chemical fingerprints in linear and sublinear time SJ Swamidass, P Baldi Journal of chemical information and modeling 47 (2), 302-317, 2007	95	2007
Mining small-molecule screens to repurpose drugs SJ Swamidass Briefings in bioinformatics 12 (4), 327-335, 2011	80	2011
One-to four-dimensional kernels for virtual screening and the prediction of physical, chemical, and biological properties CA Azencott, A Ksikes, SJ Swamidass, JH Chen, L Ralaivola, P Baldi Journal of chemical information and modeling 47 (3), 965-974, 2007	78	2007
Discovery of power-laws in chemical space RW Benz, SJ Swamidass, P Baldi Journal of chemical information and modeling 48 (6), 1138-1151, 2008	63	2008
Modeling reactivity to biological macromolecules with a deep multitask network TB Hughes, NL Dang, GP Miller, SJ Swamidass ACS central science 2 (8), 529-537, 2016	58	2016
Site of reactivity models predict molecular reactivity of diverse chemicals with glutathione TB Hughes, GP Miller, SJ Swamidass Chemical research in toxicology 28 (4), 797-809, 2015	57	2015
Lossless compression of chemical fingerprints using integer entropy codes improves storage and retrieval P Baldi, RW Benz, DS Hirschberg, SJ Swamidass Journal of chemical information and modeling 47 (6), 2098-2109, 2007	53	2007
Functional census of mutation sequence spaces: the example of p53 cancer rescue mutants SA Danziger, SJ Swamidass, J Zeng, LR Dearth, Q Lu, JH Chen, J Cheng, ... IEEE/ACM transactions on computational biology and bioinformatics 3 (2), 114-125, 2006	51	2006

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