Zhenjiang Zech Xu
Zhenjiang Zech Xu
State Key Laboratory of Food Science and Technology, Nanchang University
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
22962019
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
9952017
Normalization and microbial differential abundance strategies depend upon data characteristics
S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger, A Gonzalez, C Lozupone, ...
Microbiome 5 (1), 1-18, 2017
7932017
Meta-analyses of human gut microbes associated with obesity and IBD
WA Walters, Z Xu, R Knight
FEBS letters 588 (22), 4223-4233, 2014
6192014
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
5802018
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
5582018
Deblur rapidly resolves single-nucleotide community sequence patterns
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, ZZ Xu, ...
MSystems 2 (2), 2017
4822017
Advancing Our Understanding of the Human Microbiome Using QIIME.
JA Navas-Molina, JM Peralta-Sanchezl, A Gonzalezl, PJ McMurdieI, ...
Methods in Enzymology, 371, 2013
4732013
Microbiome-wide association studies link dynamic microbial consortia to disease
JA Gilbert, RA Quinn, J Debelius, ZZ Xu, J Morton, N Garg, JK Jansson, ...
Nature 535 (7610), 94-103, 2016
4522016
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
S Weiss, W Van Treuren, C Lozupone, K Faust, J Friedman, Y Deng, ...
The ISME journal 10 (7), 1669-1681, 2016
3862016
Subsistence strategies in traditional societies distinguish gut microbiomes
AJ Obregon-Tito, RY Tito, J Metcalf, K Sankaranarayanan, JC Clemente, ...
Nature communications 6 (1), 1-9, 2015
3062015
Dietary effects on human gut microbiome diversity
Z Xu, R Knight
British Journal of Nutrition 113 (S1), S1-S5, 2015
3032015
Microbial community assembly and metabolic function during mammalian corpse decomposition
JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren, ER Hyde, SJ Song, ...
Science 351 (6269), 158-162, 2016
2802016
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 2018
2472018
Preservation methods differ in fecal microbiome stability, affecting suitability for field studies
SJ Song, A Amir, JL Metcalf, KR Amato, ZZ Xu, G Humphrey, R Knight
MSystems 1 (3), 2016
2092016
Prediction of early childhood caries via spatial-temporal variations of oral microbiota
F Teng, F Yang, S Huang, C Bo, ZZ Xu, A Amir, R Knight, J Ling, J Xu
Cell host & microbe 18 (3), 296-306, 2015
1402015
Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism
A Zarrinpar, A Chaix, ZZ Xu, MW Chang, CA Marotz, A Saghatelian, ...
Nature communications 9 (1), 1-13, 2018
1242018
Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor
MP Vockenhuber, CM Sharma, MG Statt, D Schmidt, Z Xu, S Dietrich, ...
RNA biology 8 (3), 468-477, 2011
1012011
Open-source sequence clustering methods improve the state of the art
E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ...
MSystems 1 (1), 2016
972016
A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease
C Caussy, A Tripathi, G Humphrey, S Bassirian, S Singh, C Faulkner, ...
Nature communications 10 (1), 1-9, 2019
932019
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