Adrien Melquiond
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The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes
GCP Van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ...
Journal of molecular biology 428 (4), 720-725, 2016
6872016
A unified conformational selection and induced fit approach to protein-peptide docking
M Trellet, ASJ Melquiond, AMJJ Bonvin
PloS one 8 (3), e58769, 2013
1352013
Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server
E Karaca, ASJ Melquiond, SJ De Vries, PL Kastritis, AMJJ Bonvin
Molecular & Cellular Proteomics 9 (8), 1784-1794, 2010
1192010
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1032016
Role of the region 23-28 in Aβ fibril formation: insights from simulations of the monomers and dimers of Alzheimer's peptides Aβ40 and Aβ42
A Melquiond, X Dong, N Mousseau, P Derreumaux
Current Alzheimer Research 5 (3), 244-250, 2008
1012008
Clustering biomolecular complexes by residue contacts similarity
JP Rodrigues, M Trellet, C Schmitz, P Kastritis, E Karaca, ASJ Melquiond, ...
Proteins: Structure, Function, and Bioinformatics 80 (7), 1810-1817, 2012
682012
Following the aggregation of amyloid-forming peptides by computer simulations
A Melquiond, G Boucher, N Mousseau, P Derreumaux
The Journal of chemical physics 122 (17), 174904, 2005
622005
Insight into cyanobacterial circadian timing from structural details of the KaiB–KaiC interaction
J Snijder, RJ Burnley, A Wiegard, ASJ Melquiond, AMJJ Bonvin, ...
Proceedings of the National Academy of Sciences 111 (4), 1379-1384, 2014
612014
Structures of soluble amyloid oligomers from computer simulations
A Melquiond, N Mousseau, P Derreumaux
PROTEINS: Structure, Function, and Bioinformatics 65 (1), 180-191, 2006
582006
Integrative modeling of biomolecular complexes: HADDOCKing with cryo-electron microscopy data
GCP van Zundert, ASJ Melquiond, AMJJ Bonvin
Structure 23 (5), 949-960, 2015
502015
Defining the limits of homology modeling in information‐driven protein docking
J Rodrigues, ASJ Melquiond, E Karaca, M Trellet, M Van Dijk, ...
Proteins: Structure, Function, and Bioinformatics 81 (12), 2119-2128, 2013
502013
Strengths and weaknesses of data‐driven docking in critical assessment of prediction of interactions
SJ de Vries, ASJ Melquiond, PL Kastritis, E Karaca, A Bordogna, ...
Proteins: Structure, Function, and Bioinformatics 78 (15), 3242-3249, 2010
452010
Blind prediction of interfacial water positions in CAPRI
MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ...
Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014
442014
Probing amyloid fibril formation of the NFGAIL peptide by computer simulations
A Melquiond, JC Gelly, N Mousseau, P Derreumaux
The Journal of chemical physics 126 (6), 02B605, 2007
382007
dMM-PBSA: a new HADDOCK scoring function for protein-peptide docking
D Spiliotopoulos, PL Kastritis, ASJ Melquiond, AMJJ Bonvin, G Musco, ...
Frontiers in molecular biosciences 3, 46, 2016
322016
Enhancers reside in a unique epigenetic environment during early zebrafish development
LJT Kaaij, M Mokry, M Zhou, M Musheev, G Geeven, ASJ Melquiond, ...
Genome biology 17 (1), 1-15, 2016
292016
Next challenges in protein–protein docking: from proteome to interactome and beyond
ASJ Melquiond, E Karaca, PL Kastritis, AMJJ Bonvin
Wiley Interdisciplinary Reviews: Computational Molecular Science 2 (4), 642-651, 2012
292012
Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2
Z Kurkcuoglu, PI Koukos, N Citro, ME Trellet, J Rodrigues, IS Moreira, ...
Journal of computer-aided molecular design 32 (1), 175-185, 2018
272018
Supramolecular structure of membrane-associated polypeptides by combining solid-state NMR and molecular dynamics simulations
M Weingarth, C Ader, ASJ Melquiond, D Nand, O Pongs, S Becker, ...
Biophysical journal 103 (1), 29-37, 2012
202012
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
172019
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Artikelen 1–20