Marc van Dijk
Marc van Dijk
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The HADDOCK web server for data-driven biomolecular docking
SJ De Vries, M Van Dijk, AMJJ Bonvin
Nature protocols 5 (5), 883, 2010
10062010
The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes
GCP Van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ...
Journal of molecular biology 428 (4), 720-725, 2016
6832016
HADDOCK versus HADDOCK: new features and performance of HADDOCK2. 0 on the CAPRI targets
SJ De Vries, ADJ Van Dijk, M Krzeminski, M van Dijk, A Thureau, V Hsu, ...
Proteins: structure, function, and bioinformatics 69 (4), 726-733, 2007
5932007
3D-DART: a DNA structure modelling server
M van Dijk, AMJJ Bonvin
Nucleic acids research 37 (suppl_2), W235-W239, 2009
2872009
The hepatocyte growth factor/Met pathway controls proliferation and apoptosis in multiple myeloma
PWB Derksen, DJJ De Gorter, HP Meijer, RJ Bende, M Van Dijk, ...
Leukemia 17 (4), 764-774, 2003
1842003
Information-driven protein–DNA docking using HADDOCK: it is a matter of flexibility
M van Dijk, ADJ van Dijk, V Hsu, R Boelens, AMJJ Bonvin
Nucleic acids research 34 (11), 3317-3325, 2006
1822006
WeNMR: structural biology on the grid
TA Wassenaar, M Van Dijk, N Loureiro-Ferreira, G Van Der Schot, ...
Journal of Grid Computing 10 (4), 743-767, 2012
1592012
Mass spec studio for integrative structural biology
M Rey, V Sarpe, KM Burns, J Buse, CAH Baker, M van Dijk, L Wordeman, ...
Structure 22 (10), 1538-1548, 2014
612014
A protein–DNA docking benchmark
M Van Dijk, AMJJ Bonvin
Nucleic acids research 36 (14), e88-e88, 2008
582008
Defining the limits of homology modeling in information‐driven protein docking
J Rodrigues, ASJ Melquiond, E Karaca, M Trellet, M Van Dijk, ...
Proteins: Structure, Function, and Bioinformatics 81 (12), 2119-2128, 2013
502013
Pushing the limits of what is achievable in protein–DNA docking: benchmarking HADDOCK’s performance
M van Dijk, AMJJ Bonvin
Nucleic acids research 38 (17), 5634-5647, 2010
472010
Strengths and weaknesses of data‐driven docking in critical assessment of prediction of interactions
SJ de Vries, ASJ Melquiond, PL Kastritis, E Karaca, A Bordogna, ...
Proteins: Structure, Function, and Bioinformatics 78 (15), 3242-3249, 2010
452010
Blind prediction of interfacial water positions in CAPRI
MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ...
Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014
442014
Follicular lymphoma with a novel t (14; 18) breakpoint involving the immunoglobulin heavy chain switch mu region indicates an origin from germinal center B cells
JAL Fenton, JW Vaandrager, WM Aarts, RJ Bende, K Heering, M van Dijk, ...
Blood, The Journal of the American Society of Hematology 99 (2), 716-718, 2002
382002
Rapid prediction of multi-dimensional NMR data sets
S Gradmann, C Ader, I Heinrich, D Nand, M Dittmann, A Cukkemane, ...
Journal of biomolecular NMR 54 (4), 377-387, 2012
322012
The structure of the XPF-ssDNA complex underscores the distinct roles of the XPF and ERCC1 helix-hairpin-helix domains in ss/ds DNA recognition
D Das, GE Folkers, M van Dijk, NGJ Jaspers, JHJ Hoeijmakers, R Kaptein, ...
Structure 20 (4), 667-675, 2012
312012
A flexible, grid-enabled web portal for GROMACS molecular dynamics simulations
M van Dijk, TA Wassenaar, AMJJ Bonvin
Journal of Chemical theory and Computation 8 (10), 3463-3472, 2012
282012
Multiple ICAM‐1 (CD54) Epitopes are Involved in Homotypic B‐Cell Adhesion
P Bloemen, G MOLDRNHAUER, M Van Dijk, HJ Schuurman, AC Bloem
Scandinavian journal of immunology 35 (5), 517-523, 1992
261992
Solvated protein–DNA docking using HADDOCK
M van Dijk, KM Visscher, PL Kastritis, AMJJ Bonvin
Journal of biomolecular NMR 56 (1), 51-63, 2013
192013
Sense and simplicity in HADDOCK scoring: Lessons from CASP‐CAPRI round 1
A Vangone, J Rodrigues, LC Xue, GCP van Zundert, C Geng, ...
Proteins: Structure, Function, and Bioinformatics 85 (3), 417-423, 2017
162017
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Artikelen 1–20