| Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019 | 308* | 2019 |
| DeepSol: a deep learning framework for sequence-based protein solubility prediction S Khurana, R Rawi, K Kunji, GY Chuang, H Bensmail, R Mall Bioinformatics 34 (15), 2605-2613, 2018 | 213 | 2018 |
| PaRSnIP: sequence-based protein solubility prediction using gradient boosting machine R Rawi, R Mall, K Kunji, CH Shen, PD Kwong, GY Chuang Bioinformatics 34 (7), 1092-1098, 2018 | 101 | 2018 |
| DeepCrystal: a deep learning framework for sequence-based protein crystallization prediction A Elbasir, B Moovarkumudalvan, K Kunji, PR Kolatkar, H Bensmail, R Mall Bioinformatics., 2018 | 52 | 2018 |
| RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes R Mall, L Cerulo, L Garofano, V Frattini, K Kunji, H Bensmail, TS Sabedot, ... Nucleic acids research 46 (7), e39-e39, 2018 | 49 | 2018 |
| BCrystal: an interpretable sequence-based protein crystallization predictor A Elbasir, R Mall, K Kunji, R Rawi, Z Islam, GY Chuang, PR Kolatkar, ... Bioinformatics 36 (5), 1429-1438, 2020 | 34 | 2020 |
| Comparison and assessment of family-and population-based genotype imputation methods in large pedigrees E Ullah, R Mall, MM Abbas, K Kunji, AQ Nato, H Bensmail, EM Wijsman, ... Genome research 29 (1), 125-134, 2019 | 24 | 2019 |
| Genetic predisposition to cancer across people of different ancestries in Qatar: a population-based, cohort study M Saad, Y Mokrab, N Halabi, J Shan, R Razali, K Kunji, N Syed, ... The Lancet Oncology 23 (3), 341-352, 2022 | 21 | 2022 |
| Differential Community Detection in Paired Biological Networks R Mall, E Ullah, K Kunji, F D'Angelo, H Bensmail, M Ceccarelli Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | 16 | 2017 |
| Network-based identification of key master regulators associated with an immune-silent cancer phenotype R Mall, M Saad, J Roelands, D Rinchai, K Kunji, H Almeer, W Hendrickx, ... Briefings in bioinformatics 22 (6), bbab168, 2021 | 15 | 2021 |
| An unsupervised disease module identification technique in biological networks using novel quality metric based on connectivity, conductance and modularity R Mall, E Ullah, K Kunji, M Ceccarelli, H Bensmail F1000Research 7, 378, 2018 | 13 | 2018 |
| Coevolution analysis of HIV-1 envelope glycoprotein complex R Rawi, K Kunji, A Haoudi, H Bensmail PLoS One 10 (11), e0143245, 2015 | 13 | 2015 |
| Validation of polygenic risk scores for Coronary Heart Disease in a Middle Eastern Cohort using whole genome sequencing M Saad, A El-Menyar, K Kunji, E Ullah, J Al Suwaidi, IJ Kullo Circulation: Genomic and Precision Medicine 15 (6), e003712, 2022 | 7 | 2022 |
| COUSCOus: improved protein contact prediction using an empirical Bayes covariance estimator R Rawi, R Mall, K Kunji, M El Anbari, M Aupetit, E Ullah, H Bensmail BMC bioinformatics 17, 1-9, 2016 | 6 | 2016 |
| Untargeted metabolomics profiling reveals perturbations in arginine-NO metabolism in middle eastern patients with coronary heart disease E Ullah, A El-Menyar, K Kunji, R Elsousy, HRB Mokhtar, E Ahmad, ... Metabolites 12 (6), 517, 2022 | 5 | 2022 |
| Whole genome sequencing of a middle eastern cohort replicates known loci for coronary heart disease and identifies potential novel ones K Kunji, A El-Menyar, E Ullah, I Kullo, M Saad, J Al Suwaidi Journal of the American College of Cardiology 77 (18_Supplement_1), 13-13, 2021 | 3 | 2021 |
| GIGI-Quick: a fast approach to impute missing genotypes in genome-wide association family data K Kunji, E Ullah, AQ Nato Jr, EM Wijsman, M Saad Bioinformatics 34 (9), 1591-1593, 2018 | 3 | 2018 |
| An adaptive refinement for community detection methods for disease module identification in biological networks using novel metric based on connectivity, conductance & modularity R Mall, E Ullah, K Kunji, H Bensmail, M Ceccarelli 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017 | 3 | 2017 |
| Analytic pipelines to assess the relationship between immune response and germline genetics in human tumors RW Sayaman, M Saad, C Heimann, D Hu, K Kunji, J Roelands, DM Wolf, ... STAR protocols 3 (4), 101809, 2022 | 2 | 2022 |
| Genetic Susceptibility to Arrhythmia Phenotypes in a Middle Eastern Cohort of 14,259 Whole-Genome Sequenced Individuals F Qafoud, M Elshrif, K Kunji, A Althani, A Salam, J Al Suwaidi, N Asaad, ... Journal of Clinical Medicine 13 (4), 1102, 2024 | 1 | 2024 |
Halima BensmailPrincipal Scientist, QCRI and Joint professor, Texas A and M at QatarVerified email at hbku.edu.qa
