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Vladimir Gligorijevic
Vladimir Gligorijevic
Prescient Design, Genentech, Research & Early Development (gRED)
Verified email at gene.com - Homepage
Title
Cited by
Cited by
Year
Structure-based protein function prediction using graph convolutional networks
V Gligorijević, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ...
Nature communications 12 (1), 3168, 2021
2762021
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
2622019
Methods for biological data integration: perspectives and challenges
V Gligorijević, N Pržulj
Journal of the Royal Society Interface 12 (112), 20150571, 2015
2542015
Integrative methods for analyzing big data in precision medicine
V Gligorijević, N Malod‐Dognin, N Pržulj
Proteomics 16 (5), 741-758, 2016
1892016
deepNF: deep network fusion for protein function prediction
V Gligorijević, M Barot, R Bonneau
Bioinformatics 34 (22), 3873-3881, 2018
1672018
Non-negative matrix factorizations for multiplex network analysis
V Gligorijević, Y Panagakis, S Zafeiriou
IEEE transactions on pattern analysis and machine intelligence 41 (4), 928-940, 2018
772018
Co-evolutionary mechanisms of emotional bursts in online social dynamics and networks
B Tadić, V Gligorijević, M Mitrović, M Šuvakov
Entropy 15 (12), 5084-5120, 2013
582013
Fuse: multiple network alignment via data fusion
V Gligorijević, N Malod-Dognin, N Pržulj
Bioinformatics 32 (8), 1195-1203, 2016
572016
Patient-specific data fusion for cancer stratification and personalised treatment
V Gligorijević, N Malod-Dognin, N Pržulj
Biocomputing 2016: Proceedings of the Pacific Symposium, 321-332, 2016
532016
How the online social networks are used: dialogues-based structure of MySpace
M Šuvakov, M Mitrović, V Gligorijević, B Tadić
Journal of the Royal Society Interface 10 (79), 20120819, 2013
452013
Integration of molecular network data reconstructs Gene Ontology
V Gligorijević, V Janjić, N Pržulj
Bioinformatics 30 (17), i594-i600, 2014
412014
Function-guided protein design by deep manifold sampling
V Gligorijević, D Berenberg, S Ra, A Watkins, S Kelow, K Cho, R Bonneau
bioRxiv, 2021.12. 22.473759, 2021
202021
Structure and stability of online chat networks built on emotion-carrying links
V Gligorijević, M Skowron, B Tadić
Physica A: Statistical Mechanics and its Applications 392 (3), 538-543, 2013
202013
Fusion and community detection in multi-layer graphs
V Gligorijević, Y Panagakis, S Zafeiriou
2016 23rd International Conference on Pattern Recognition (ICPR), 1327-1332, 2016
162016
Directed networks of online chats: Content-based linking and social structure
V Gligorijevic, M Skowron, B Tadic
2012 Eighth International Conference on Signal Image Technology and Internet†…, 2012
132012
NetQuilt: deep multispecies network-based protein function prediction using homology-informed network similarity
M Barot, V Gligorijević, K Cho, R Bonneau
Bioinformatics 37 (16), 2414-2422, 2021
92021
Protein structural alignments from sequence
JT Morton, CEM Strauss, R Blackwell, D Berenberg, V Gligorijevic, ...
BioRxiv, 2020.11. 03.365932, 2020
92020
Network wiring of pleiotropic kinases yields insight into protective role of diabetes on aneurysm
A Sarajlić, V Gligorijević, D Radak, N Pržulj
Integrative Biology 6 (11), 1049-1057, 2014
92014
Equifold: Protein structure prediction with a novel coarse-grained structure representation
JH Lee, P Yadollahpour, A Watkins, NC Frey, A Leaver-Fay, S Ra, K Cho, ...
bioRxiv, 2022.10. 07.511322, 2022
82022
TM-Vec: template modeling vectors for fast homology detection and alignment
T Hamamsy, JT Morton, D Berenberg, N Carriero, V Gligorijevic, ...
bioRxiv, 2022.07. 25.501437, 2022
62022
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