| The complete genome sequence of the gastric pathogen Helicobacter pylori JF Tomb, O White, AR Kerlavage, RA Clayton, GG Sutton, ... Nature 388 (6642), 539-547, 1997 | 4011 | 1997 |
| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases R Caspi, T Altman, R Billington, K Dreher, H Foerster, CA Fulcher, ... Nucleic acids research 42 (D1), D459-D471, 2014 | 2748* | 2014 |
| A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ... Molecular systems biology 3 (1), 121, 2007 | 1531 | 2007 |
| The genome of the natural genetic engineer Agrobacterium tumefaciens C58 DW Wood, JC Setubal, R Kaul, DE Monks, JP Kitajima, VK Okura, Y Zhou, ... science 294 (5550), 2317-2323, 2001 | 898 | 2001 |
| EcoCyc: a comprehensive database resource for Escherichia coli IM Keseler, J Collado-Vides, S Gama-Castro, J Ingraham, S Paley, ... Nucleic acids research 33 (suppl_1), D334-D337, 2005 | 889 | 2005 |
| The pathway tools software PD Karp, S Paley, P Romero Bioinformatics 18 (suppl_1), S225-S232, 2002 | 750 | 2002 |
| Expansion of the BioCyc collection of pathway/genome databases to 160 genomes PD Karp, CA Ouzounis, C Moore-Kochlacs, L Goldovsky, P Kaipa, ... Nucleic acids research 33 (19), 6083-6089, 2005 | 714 | 2005 |
| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases R Caspi, R Billington, L Ferrer, H Foerster, CA Fulcher, IM Keseler, ... Nucleic acids research 44 (D1), D471-D480, 2016 | 685 | 2016 |
| EcoCyc: fusing model organism databases with systems biology IM Keseler, A Mackie, M Peralta-Gil, A Santos-Zavaleta, S Gama-Castro, ... Nucleic acids research 41 (D1), D605-D612, 2013 | 641 | 2013 |
| The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010 | 626 | 2010 |
| The ecocyc database PD Karp, M Riley, M Saier, IT Paulsen, J Collado-Vides, SM Paley, ... Nucleic acids research 30 (1), 56-58, 2002 | 588 | 2002 |
| Computational prediction of human metabolic pathways from the complete human genome P Romero, J Wagg, ML Green, D Kaiser, M Krummenacker, PD Karp Genome biology 6 (1), R2, 2005 | 531 | 2005 |
| EcoCyc: a comprehensive database of Escherichia coli biology IM Keseler, J Collado-Vides, A Santos-Zavaleta, M Peralta-Gil, ... Nucleic acids research 39 (suppl_1), D583-D590, 2010 | 521 | 2010 |
| The complete genome sequence of Francisella tularensis, the causative agent of tularemia P Larsson, PCF Oyston, P Chain, MC Chu, M Duffield, HH Fuxelius, ... Nature genetics 37 (2), 153-159, 2005 | 514 | 2005 |
| Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology PD Karp, SM Paley, M Krummenacker, M Latendresse, JM Dale, TJ Lee, ... Briefings in bioinformatics 11 (1), 40-79, 2010 | 512 | 2010 |
| OKBC: A programmatic foundation for knowledge base interoperability VK Chaudhri, A Farquhar, R Fikes, PD Karp, JP Rice AAAI/IAAI, 600-607, 1998 | 476 | 1998 |
| EcoCyc: A comprehensive view of Escherichia coli biology IM Keseler, C Bonavides-Martínez, J Collado-Vides, S Gama-Castro, ... Nucleic acids research 37 (suppl_1), D464-D470, 2009 | 440 | 2009 |
| MetaCyc: a multiorganism database of metabolic pathways and enzymes R Caspi, H Foerster, CA Fulcher, R Hopkinson, J Ingraham, P Kaipa, ... Nucleic acids research 34 (suppl_1), D511-D516, 2006 | 428 | 2006 |
| MetaCyc: a multiorganism database of metabolic pathways and enzymes CJ Krieger, P Zhang, LA Mueller, A Wang, S Paley, M Arnaud, J Pick, ... Nucleic acids research 32 (suppl_1), D438-D442, 2004 | 367 | 2004 |
| The metacyc database PD Karp, M Riley, SM Paley, A Pellegrini-Toole Nucleic acids research 30 (1), 59-61, 2002 | 358 | 2002 |
Suzanne PaleySRI InternationalVerified email at ai.sri.com
