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Chen Yang
Chen Yang
University of British Columbia
Verified email at bcgsc.ca
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Year
Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism
RL Warren, CI Keeling, MMS Yuen, A Raymond, GA Taylor, ...
The Plant Journal 83 (2), 189-212, 2015
2322015
NanoSim: nanopore sequence read simulator based on statistical characterization
C Yang, J Chu, RL Warren, I Birol
GigaScience 6 (4), gix010, 2017
2152017
LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
RL Warren, C Yang, BP Vandervalk, B Behsaz, A Lagman, SJM Jones, ...
GigaScience 4 (1), s13742-015-0076-3, 2015
215*2015
Actinomycetes from Red Sea sponges: sources for chemical and phylogenetic diversity
UR Abdelmohsen, C Yang, H Horn, D Hajjar, T Ravasi, U Hentschel
Marine drugs 12 (5), 2771-2789, 2014
1012014
AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens
C Li, D Sutherland, SA Hammond, C Yang, F Taho, L Bergman, ...
BMC genomics 23 (1), 77, 2022
752022
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art
J Chu, H Mohamadi, RL Warren, C Yang, I Birol
Bioinformatics 33 (8), 1261-1270, 2017
642017
Assembly of the complete Sitka spruce chloroplast genome using 10X Genomics’ GemCode sequencing data
L Coombe, RL Warren, SD Jackman, C Yang, BP Vandervalk, RA Moore, ...
PloS one 11 (9), e0163059, 2016
522016
RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes
KM Nip, R Chiu, C Yang, J Chu, H Mohamadi, RL Warren, I Birol
Genome research 30 (8), 1191-1200, 2020
48*2020
Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes
Z Xue, RL Warren, EA Gibb, D MacMillan, J Wong, R Chiu, SA Hammond, ...
BMC genomics 19, 1-12, 2018
282018
Konnector v2. 0: pseudo-long reads from paired-end sequencing data
BP Vandervalk, C Yang, Z Xue, K Raghavan, J Chu, H Mohamadi, ...
BMC Medical Genomics 8, 1-10, 2015
252015
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph
BP Vandervalk, SD Jackman, A Raymond, H Mohamadi, C Yang, ...
2014 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2014
192014
Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data
S Hafezqorani, C Yang, T Lo, KM Nip, RL Warren, I Birol
Gigascience 9 (6), giaa061, 2020
162020
Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2
KM Nip, S Hafezqorani, KK Gagalova, R Chiu, C Yang, RL Warren, I Birol
Nature Communications 14 (1), 2940, 2023
92023
Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim
C Yang, T Lo, KM Nip, S Hafezqorani, RL Warren, I Birol
GigaScience 12, giad013, 2023
32023
Terminitor: cleavage site prediction using deep learning models
C Yang, C Li, KM Nip, RL Warren, I Birol
bioRxiv, 710699, 2019
32019
RNA-Scoop: interactive visualization of transcripts in single-cell transcriptomes
M Stephenson, KM Nip, S HafezQorani, KK Gagalova, C Yang, ...
NAR Genomics and Bioinformatics 3 (4), lqab105, 2021
12021
Isolation, Phylogenetic Analysis and Antibiotic Activity Screening of Red Sea Sponge-Associated Actinobacteria
C Yang
12013
Computational modelling, simulation, and prediction of biological sequences
C Yang
University of British Columbia, 2021
2021
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