Daniel Dalevi
Daniel Dalevi
Aweria AB
Verified email at aweria.com
Title
Cited by
Cited by
Year
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ...
Applied and environmental microbiology 72 (7), 5069-5072, 2006
91232006
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ...
Nature 450 (7169), 560-565, 2007
13392007
IMG/M: a data management and analysis system for metagenomes
VM Markowitz, NN Ivanova, E Szeto, K Palaniappan, K Chu, D Dalevi, ...
Nucleic acids research 36 (suppl_1), D534-D538, 2007
4082007
ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
E Kristiansson, P Hugenholtz, D Dalevi
Bioinformatics 25 (20), 2737-2738, 2009
1472009
Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting
J Samuelsson, D Dalevi, F Levander, T Rögnvaldsson
Bioinformatics 20 (18), 3628-3635, 2004
942004
Bridging the gap between systems biology and medicine
G Clermont, C Auffray, Y Moreau, DM Rocke, D Dalevi, D Dubhashi, ...
Genome medicine 1 (9), 88, 2009
702009
Annotation of metagenome short reads using proxygenes
D Dalevi, NN Ivanova, K Mavromatis, SD Hooper, E Szeto, P Hugenholtz, ...
Bioinformatics 24 (16), i7-i13, 2008
562008
Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation
M Cvijović, D Dalevi, E Bilsland, GJL Kemp, P Sunnerhagen
BMC bioinformatics 8 (1), 295, 2007
482007
Estimating DNA coverage and abundance in metagenomes using a gamma approximation
SD Hooper, D Dalevi, A Pati, K Mavromatis, NN Ivanova, NC Kyrpides
Bioinformatics 26 (3), 295-301, 2010
372010
Bayesian classifiers for detecting HGT using fixed and variable order markov models of genomic signatures
D Dalevi, D Dubhashi, M Hermansson
Bioinformatics 22 (5), 517-522, 2006
332006
A 6-gene signature identifies four molecular subgroups of neuroblastoma
F Abel, D Dalevi, M Nethander, R Jörnsten, K De Preter, J Vermeulen, ...
Cancer cell international 11 (1), 9, 2011
272011
A molecular study of microbe transfer between distant environments
SD Hooper, J Raes, KU Foerstner, ED Harrington, D Dalevi, P Bork
PLoS One 3 (7), e2607, 2008
252008
Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
D Dalevi, TZ DeSantis, J Fredslund, GL Andersen, VM Markowitz, ...
BMC bioinformatics 8 (1), 1-6, 2007
192007
The peres-shields order estimator for fixed and variable length markov models with applications to DNA sequence similarity
D Dalevi, D Dubhashi
International Workshop on Algorithms in Bioinformatics, 291-302, 2005
162005
ERBB3 is a marker of a ganglioneuroblastoma/ganglioneuroma-like expression profile in neuroblastic tumours
A Wilzén, C Krona, B Sveinbjörnsson, E Kristiansson, D Dalevi, I Øra, ...
Molecular cancer 12 (1), 70, 2013
132013
Expected gene-order distances and model selection in bacteria
D Dalevi, N Eriksen
Bioinformatics 24 (11), 1332-1338, 2008
132008
A new order estimator for fixed and variable length Markov models with applications to DNA sequence similarity
D Dalevi, D Dubhashi, M Hermansson
Statistical applications in genetics and molecular biology 5 (1), 2006
122006
Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach
SD Hooper, IJ Anderson, A Pati, D Dalevi, K Mavromatis, NC Kyrpides
Nucleic acids research 37 (7), 2096-2104, 2009
72009
Gene order rearrangements with Derange: weights and reliability
N Eriksen, D Dalevi, SGE Andersson, K Eriksson
preprint, 0
5
Combining evidence of preferential gene-tissue relationships from multiple sources
J Guo, M Hammar, L Öberg, SS Padmanabhuni, M Bjäreland, D Dalevi
PloS one 8 (8), e70568, 2013
42013
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Articles 1–20