Ivo Hofacker
Ivo Hofacker
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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
ViennaRNA Package 2.0
R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ...
Algorithms for molecular biology 6, 1-14, 2011
RNA maps reveal new RNA classes and a possible function for pervasive transcription
P Kapranov, J Cheng, S Dike, DA Nix, R Duttagupta, AT Willingham, ...
Science 316 (5830), 1484-1488, 2007
Fast folding and comparison of RNA secondary structures
IL Hofacker, W Fontana, PF Stadler, LS Bonhoeffer, M Tacker, P Schuster
Monatshefte fur chemie 125, 167-167, 1994
Vienna RNA secondary structure server
IL Hofacker
Nucleic acids research 31 (13), 3429-3431, 2003
The vienna RNA websuite
AR Gruber, R Lorenz, SH Bernhart, R Neuböck, IL Hofacker
Nucleic acids research 36 (suppl_2), W70-W74, 2008
From sequences to shapes and back: a case study in RNA secondary structures
P Schuster, W Fontana, PF Stadler, IL Hofacker
Proceedings of the Royal Society of London. Series B: Biological Sciences …, 1994
Fast and reliable prediction of noncoding RNAs
S Washietl, IL Hofacker, PF Stadler
Proceedings of the National Academy of Sciences 102 (7), 2454-2459, 2005
Secondary structure prediction for aligned RNA sequences
IL Hofacker, M Fekete, PF Stadler
Journal of molecular biology 319 (5), 1059-1066, 2002
Complete suboptimal folding of RNA and the stability of secondary structures
S Wuchty, W Fontana, IL Hofacker, P Schuster
Biopolymers: Original Research on Biomolecules 49 (2), 145-165, 1999
RNAalifold: improved consensus structure prediction for RNA alignments
SH Bernhart, IL Hofacker, S Will, AR Gruber, PF Stadler
BMC bioinformatics 9, 1-13, 2008
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering
S Will, K Reiche, IL Hofacker, PF Stadler, R Backofen
PLoS computational biology 3 (4), e65, 2007
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome
S Washietl, IL Hofacker, M Lukasser, A Hüttenhofer, PF Stadler
Nature biotechnology 23 (11), 1383-1390, 2005
Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams
P Kerpedjiev, S Hammer, IL Hofacker
Bioinformatics 31 (20), 3377-3379, 2015
Thermodynamics of RNA–RNA binding
U Mückstein, H Tafer, J Hackermüller, SH Bernhart, PF Stadler, ...
Bioinformatics 22 (10), 1177-1182, 2006
RNA folding at elementary step resolution
C Flamm, W Fontana, IL Hofacker, P Schuster
Rna 6 (3), 325-338, 2000
RNAplex: a fast tool for RNA–RNA interaction search
H Tafer, IL Hofacker
Bioinformatics 24 (22), 2657-2663, 2008
LocARNA-P: accurate boundary prediction and improved detection of structural RNAs
S Will, T Joshi, IL Hofacker, PF Stadler, R Backofen
Rna 18 (5), 900-914, 2012
The expansion of the metazoan microRNA repertoire
J Hertel, M Lindemeyer, K Missal, C Fried, A Tanzer, C Flamm, ...
BMC genomics 7, 1-15, 2006
RNA folding and combinatory landscapes
W Fontana, PF Stadler, EG Bornberg-Bauer, T Griesmacher, IL Hofacker, ...
Physical review E 47 (3), 2083, 1993
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