Claire Duvallet
TitleCited byYear
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
1682018
Meta-analysis of gut microbiome studies identifies disease-specific and shared responses
C Duvallet, SM Gibbons, T Gurry, RA Irizarry, EJ Alm
Nature communications 8 (1), 1784, 2017
1372017
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
482019
Correcting for batch effects in case-control microbiome studies
SM Gibbons, C Duvallet, EJ Alm
PLoS computational biology 14 (4), e1006102, 2018
162018
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ Preprints 6: e27295v2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
112018
Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort
T Gurry, SM Gibbons, SM Kearney, A Ananthakrishnan, X Jiang, ...
Scientific reports 8 (1), 12699, 2018
72018
A practical guide to methods controlling false discoveries in computational biology
K Korthauer, PK Kimes, C Duvallet, A Reyes, A Subramanian, M Teng, ...
Genome biology 20 (1), 118, 2019
62019
dbOTU3: A new implementation of distribution-based OTU calling
SW Olesen, C Duvallet, EJ Alm
PloS one 12 (5), e0176335, 2017
52017
Meta‐analysis generates and prioritizes hypotheses for translational microbiome research
C Duvallet
Microbial biotechnology 11 (2), 273, 2018
42018
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology, 2019
22019
Aerodigestive sampling reveals altered microbial exchange between lung, oropharyngeal, and gastric microbiomes in children with impaired swallow function
C Duvallet, K Larson, S Snapper, S Iosim, A Lee, K Freer, K May, E Alm, ...
PloS one 14 (5), e0216453, 2019
22019
Meta analysis of microbiome studies identifies shared and disease-specific patterns
C Duvallet, SM Gibbons, T Gurry, RA Irizarry, EJ Alm
bioRxiv, 134031, 2017
12017
24-hour multi-omics analysis of residential sewage reflects human activity and informs public health
M Matus, C Duvallet, MK Soule, SM Kearney, N Endo, N Ghaeli, I Brito, ...
BioRxiv, 728022, 2019
2019
Framework for rational donor selection in fecal microbiota transplant clinical trials
C Duvallet, C Zellmer, P Panchal, S Budree, M Osman, EJ Alm
PloS one 14 (10), 2019
2019
Multi-site sampling and risk prioritization reveals the public health relevance of antibiotic resistance genes found in wastewater environments
C Dai, C Duvallet, AN Zhang, MG Matus, N Ghaeli, S Park, N Endo, ...
BioRxiv, 562496, 2019
2019
The Oropharynx Rather than the Stomach is the Primary Driver of Lung Microbiome Changes in Aspirating Children
C Duvallet, SB Snapper, S Iosim, A Lee, E Alm, R Rosen
Gastroenterology 152 (5), S115, 2017
2017
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Articles 1–16