Søren M. Karst
Title
Cited by
Cited by
Year
Back to basics–the influence of DNA extraction and primer choice on phylogenetic analysis of activated sludge communities
M Albertsen, SM Karst, AS Ziegler, RH Kirkegaard, PH Nielsen
PloS one 10 (7), e0132783, 2015
3562015
Low temperature partial nitritation/anammox in a moving bed biofilm reactor treating low strength wastewater
EM Gilbert, S Agrawal, SM Karst, H Horn, PH Nielsen, S Lackner
Environmental science & technology 48 (15), 8784-8792, 2014
2832014
MiDAS: the field guide to the microbes of activated sludge
SJ McIlroy, AM Saunders, M Albertsen, M Nierychlo, B McIlroy, ...
Database 2015, 2015
2312015
Cyanate as an energy source for nitrifiers
M Palatinszky, C Herbold, N Jehmlich, M Pogoda, P Han, M von Bergen, ...
Nature 524 (7563), 105-108, 2015
1832015
A critical assessment of the microorganisms proposed to be important to enhanced biological phosphorus removal in full-scale wastewater treatment systems
M Stokholm-Bjerregaard, SJ McIlroy, M Nierychlo, SM Karst, M Albertsen, ...
Frontiers in microbiology 8, 718, 2017
1232017
ampvis2: an R package to analyse and visualise 16S rRNA amplicon data
KS Andersen, RH Kirkegaard, SM Karst, M Albertsen
BioRxiv, 299537, 2018
1212018
MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups
SJ McIlroy, RH Kirkegaard, B McIlroy, M Nierychlo, JM Kristensen, ...
Database 2017, 2017
1132017
Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias
SM Karst, MS Dueholm, SJ McIlroy, RH Kirkegaard, PH Nielsen, ...
Nature biotechnology 36 (2), 190-195, 2018
1122018
The impact of immigration on microbial community composition in full-scale anaerobic digesters
RH Kirkegaard, SJ McIlroy, JM Kristensen, M Nierychlo, SM Karst, ...
Scientific reports 7 (1), 1-11, 2017
942017
Culture-independent analyses reveal novel anaerolineaceae as abundant primary fermenters in anaerobic digesters treating waste activated sludge
SJ McIlroy, RH Kirkegaard, MS Dueholm, E Fernando, SM Karst, ...
Frontiers in microbiology 8, 1134, 2017
932017
Metabolic model for the filamentous ‘Candidatus Microthrix parvicella’based on genomic and metagenomic analyses
SJ McIlroy, R Kristiansen, M Albertsen, SM Karst, S Rossetti, JL Nielsen, ...
The ISME journal 7 (6), 1161-1172, 2013
802013
“Candidatus Propionivibrio aalborgensis”: a novel glycogen accumulating organism abundant in full-scale enhanced biological phosphorus removal plants
M Albertsen, SJ McIlroy, M Stokholm-Bjerregaard, SM Karst, PH Nielsen
Frontiers in microbiology 7, 1033, 2016
562016
Mmgenome: a toolbox for reproducible genome extraction from metagenomes
SM Karst, RH Kirkegaard, M Albertsen
BioRxiv, 059121, 2016
482016
Characterization of the First “Candidatus Nitrotoga” Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria
K Kitzinger, H Koch, S Lücker, CJ Sedlacek, C Herbold, J Schwarz, ...
MBio 9 (4), e01186-18, 2018
462018
Survival and activity of individual bioaugmentation strains
MS Dueholm, IG Marques, SM Karst, S D’Imperio, VP Tale, D Lewis, ...
Bioresource technology 186, 192-199, 2015
442015
Genomic and in situ investigations of the novel uncultured Chloroflexi associated with 0092 morphotype filamentous bulking in activated sludge
SJ McIlroy, SM Karst, M Nierychlo, MS Dueholm, M Albertsen, ...
The ISME journal 10 (9), 2223-2234, 2016
412016
Metagenomes from deep Baltic Sea sediments reveal how past and present environmental conditions determine microbial community composition
IPG Marshall, SM Karst, PH Nielsen, BB Jørgensen
Marine genomics 37, 58-68, 2018
382018
Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters
RH Kirkegaard, MS Dueholm, SJ McIlroy, M Nierychlo, SM Karst, ...
The ISME journal 10 (10), 2352-2364, 2016
372016
The role of inoculum and reactor configuration for microbial community composition and dynamics in mainstream partial nitritation anammox reactors
S Agrawal, SM Karst, EM Gilbert, H Horn, PH Nielsen, S Lackner
MicrobiologyOpen 6 (4), e00456, 2017
322017
Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
SM Karst, RM Ziels, RH Kirkegaard, EA Sørensen, D McDonald, Q Zhu, ...
BioRxiv, 645903, 2020
292020
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