Tapio Salakoski
Tapio Salakoski
Professor of Computer Science, University of Turku
Geverifieerd e-mailadres voor utu.fi
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A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
6922013
BioInfer: a corpus for information extraction in the biomedical domain
S Pyysalo, F Ginter, J Heimonen, J Björne, J Boberg, J Järvinen, ...
BMC bioinformatics 8 (1), 50, 2007
4542007
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning
A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski
BMC bioinformatics 9 (S11), S2, 2008
3132008
Comparative analysis of five protein-protein interaction corpora
S Pyysalo, A Airola, J Heimonen, J Björne, F Ginter, T Salakoski
BMC bioinformatics 9 (S3), S6, 2008
2462008
Extracting complex biological events with rich graph-based feature sets
J Björne, J Heimonen, F Ginter, A Airola, T Pahikkala, T Salakoski
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, 10-18, 2009
2332009
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
2322016
Lactobacillus-dominated cervicovaginal microbiota associated with reduced HIV/STI prevalence and genital HIV viral load in African women
H Borgdorff, E Tsivtsivadze, R Verhelst, M Marzorati, S Jurriaans, ...
The ISME journal 8 (9), 1781-1793, 2014
1542014
Complex event extraction at PubMed scale
J Björne, F Ginter, S Pyysalo, J Tsujii, T Salakoski
Bioinformatics 26 (12), i382-i390, 2010
1312010
Generalizing biomedical event extraction
J Björne, T Salakoski
Proceedings of BioNLP Shared Task 2011 Workshop, 183-191, 2011
1302011
Why complicate things? Introducing programming in high school using Python
L Grandell, M Peltomäki, RJ Back, T Salakoski
Proceedings of the 8th Australasian Conference on Computing Education-Volume …, 2006
1192006
VILLE: a language-independent program visualization tool
T Rajala, MJ Laakso, E Kaila, T Salakoski
Proceedings of the Seventh Baltic Sea Conference on Computing Education …, 2007
1122007
TEES 2.1: Automated annotation scheme learning in the BioNLP 2013 Shared Task
J Björne, T Salakoski
Proceedings of the BioNLP shared task 2013 workshop, 16-25, 2013
1112013
A graph kernel for protein-protein interaction extraction
A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski
Proceedings of the workshop on current trends in biomedical natural language …, 2008
1102008
Large-scale event extraction from literature with multi-level gene normalization
S Van Landeghem, J Björne, CH Wei, K Hakala, S Pyysalo, S Ananiadou, ...
PloS one 8 (4), e55814, 2013
1082013
Effectiveness of Program Visualization: A Case Study with the ViLLE Tool.
T Rajala, MJ Laakso, E Kaila, T Salakoski
Journal of Information Technology Education 7, 2008
1062008
An experimental comparison of cross-validation techniques for estimating the area under the ROC curve
A Airola, T Pahikkala, W Waegeman, B De Baets, T Salakoski
Computational Statistics & Data Analysis 55 (4), 1828-1844, 2011
1052011
What about a simple language? Analyzing the difficulties in learning to program
L Mannila, M Peltomäki, T Salakoski
Computer science education 16 (3), 211-227, 2006
932006
Learning to rank with pairwise regularized least-squares
T Pahikkala, E Tsivtsivadze, A Airola, J Boberg, T Salakoski
SIGIR 2007 workshop on learning to rank for information retrieval 80, 27-33, 2007
922007
Regularized machine learning in the genetic prediction of complex traits
S Okser, T Pahikkala, A Airola, T Salakoski, S Ripatti, T Aittokallio
PLoS Genet 10 (11), e1004754, 2014
882014
Building the essential resources for Finnish: the Turku Dependency Treebank
K Haverinen, J Nyblom, T Viljanen, V Laippala, S Kohonen, A Missilä, ...
Language Resources and Evaluation 48 (3), 493-531, 2014
832014
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Artikelen 1–20