Lars Arvestad

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Jens LagergrenKTH, Royal Institute of TechnologyVerified email at scilifelab.se
Bengt SennbladManager Health and Clinical Support team, NBIS, Dpt Cell & Mol Biol, Scilifelab, Uppsala UniversityVerified email at scilifelab.se
Joakim LundebergSciLifeLab, KTH Royal Institute of TechnologyVerified email at scilifelab.se
Kristoffer SahlinAssistant Professor at Department of Mathematics, Stockholm UniversityVerified email at math.su.se
Joel SjöstrandPh.D. student, Stockholm University, Science for Life LaboratoryVerified email at scilifelab.se
Peter SavolainenProfessor of Gene Technology, KTH - Royal Institute of TechnologyVerified email at kth.se
Vincent BuloneFlinders UniversityVerified email at flinders.edu.au
Raja Hashim AliUniversity of Europe for Applied Sciences, Potsdam Campus, GermanyVerified email at giki.edu.pk
Ines EzcurraKTHVerified email at biotech.kth.se
Mehmood Alam KhanThe Royal Institute of TechnologyVerified email at kth.se
Björn NystedtHead of Bioinformatics support, SciLifeLabVerified email at scilifelab.se
Alex RajangamChief Innovation OfficerVerified email at oathinc.com
Sayyed Auwn MuhammadLead Data Scientist at EricssonVerified email at ericsson.com
Nathaniel Robert StreetProfessor, Umeå Plant Science Centre, Department of Plant Physiology, Umeå UniversityVerified email at umu.se
Vincent DaubincnrsVerified email at univ-lyon1.fr
Shruti RastogiColumbia University Medical Center, New YorkVerified email at rostlab.org
David A. LiberlesTemple UniversityVerified email at temple.edu
Katharina DittmarUniversity at BuffaloVerified email at buffalo.edu
Sophia HoberProfessorVerified email at kth.se
Christina DivneKTH Royal Institute of TechnologyVerified email at kth.se

Lars Arvestad

Stockholm University; Dept of Mathematics, and Swedish e-Science Research Center

Verified email at math.su.se - Homepage

Bioinformatics Computational Biology Genomics Evolution Phylogeny


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The Norway spruce genome sequence and conifer genome evolution B Nystedt, NR Street, A Wetterbom, A Zuccolo, YC Lin, DG Scofield, ... Nature 497 (7451), 579-584, 2013	1615	2013
Evolution after gene duplication: models, mechanisms, sequences, systems, and organisms C Roth, S Rastogi, L Arvestad, K Dittmar, S Light, D Ekman, DA Liberles Journal of Experimental Zoology Part B: Molecular and Developmental …, 2007	237	2007
Bayesian gene/species tree reconciliation and orthology analysis using MCMC L Arvestad, AC Berglund, J Lagergren, B Sennblad Bioinformatics 19 (suppl 1), i7, 2003	222	2003
Simultaneous Bayesian gene tree reconstruction and reconciliation analysis Ö Åkerborg, B Sennblad, L Arvestad, J Lagergren Proceedings of the National Academy of Sciences 106 (14), 5714, 2009	212	2009
The genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes S Djerbi, M Lindskog, L Arvestad, F Sterky, TT Teeri Planta 221, 739-746, 2005	186	2005
BESST-Efficient scaffolding of large fragmented assemblies K Sahlin, F Vezzi, B Nystedt, J Lundeberg, L Arvestad BMC Bioinformatics 15 (1), 281, 2014	179	2014
Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution L Arvestad, AC Berglund, J Lagergren, B Sennblad Proceedings of the eighth annual international conference on Research in …, 2004	167	2004
The gene evolution model and computing its associated probabilities L Arvestad, J Lagergren, B Sennblad Journal of the ACM (JACM) 56 (2), 7, 2009	109	2009
Genome-wide survey for biologically functional pseudogenes Ö Svensson, L Arvestad, J Lagergren PLoS computational biology 2 (5), e46, 2006	102	2006
A Bayesian method for analyzing lateral gene transfer J Sjöstrand, A Tofigh, V Daubin, L Arvestad, B Sennblad, J Lagergren Systematic Biology 63 (3), 409-420, 2014	100	2014
MAP20, a microtubule-associated protein in the secondary cell walls of hybrid aspen, is a target of the cellulose synthesis inhibitor 2, 6-dichlorobenzonitrile AS Rajangam, M Kumar, H Aspeborg, G Guerriero, L Arvestad, P Pansri, ... Plant Physiology 148 (3), 1283-1294, 2008	93	2008
GAM-NGS: genomic assemblies merger for next generation sequencing R Vicedomini, F Vezzi, S Scalabrin, L Arvestad, A Policriti BMC Bioinformatics 14 (Suppl 7), S6, 2013	89	2013
Classification of DNA sequences using Bloom filters H Stranneheim, M Käller, T Allander, B Andersson, L Arvestad, ... Bioinformatics 26 (13), 1595-1600, 2010	87	2010
mtDNA tandem repeats in domestic dogs and wolves: mutation mechanism studied by analysis of the sequence of imperfect repeats P Savolainen, L Arvestad, J Lundeberg Molecular biology and evolution 17 (4), 474-488, 2000	74	2000
GenPhyloData: realistic simulation of gene family evolution J Sjöstrand, L Arvestad, J Lagergren, B Sennblad BMC Bioinformatics 14 (1), 209, 2013	53	2013
The mitogenome of Norway spruce and a reappraisal of mitochondrial recombination in plants AR Sullivan, Y Eldfjell, B Schiffthaler, N Delhomme, T Asp, KH Hebelstrup, ... Genome biology and evolution 12 (1), 3586-3598, 2020	52	2020
DLRS: gene tree evolution in light of a species tree J Sjöstrand, B Sennblad, L Arvestad, J Lagergren Bioinformatics 28 (22), 2994-2995, 2012	49	2012
Assembly scaffolding with PE-contaminated mate-pair libraries K Sahlin, R Chikhi, L Arvestad Bioinformatics 32 (13), 1925-1932, 2016	46	2016
A novel method for forensic DNA investigations: repeat-type sequence analysis of tandemly repeated mtDNA in domestic dogs P Savolainen, L Arvestad, J Lundberg Journal of Forensic Sciences 45 (5), 990-999, 2000	44	2000
VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces RH Ali, M Bark, J Miró, SA Muhammad, J Sjöstrand, SM Zubair, RM Abbas, ... BMC bioinformatics 18, 1-8, 2017	37	2017

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