Lars Arvestad

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Jens LagergrenKTH, Royal Institute of TechnologyVerified email at scilifelab.se
Bengt SennbladDept of Cell and Molecular Biology, National Bioinformatics Infrastructure Sweden, Science for LifeVerified email at scilifelab.se
Joakim LundebergSciLifeLab, KTH Royal Institute of TechnologyVerified email at scilifelab.se
Kristoffer SahlinAssistant Professor at Department of Mathematics, Stockholm UniversityVerified email at math.su.se
Joel SjöstrandPh.D. student, Stockholm University, Science for Life LaboratoryVerified email at scilifelab.se
Peter SavolainenProfessor of Gene Technology, KTH - Royal Institute of TechnologyVerified email at kth.se
Vincent BuloneFlinders University and Royal Institute of Technology (KTH)Verified email at flinders.edu.au
Ines EzcurraKTHVerified email at biotech.kth.se
Björn NystedtHead of Bioinformatics support, SciLifeLabVerified email at scilifelab.se
Raja Hashim AliGhulam Ishaq Khan Institute of Engineering Sciences and TechnologyVerified email at giki.edu.pk
Nathaniel Robert StreetProfessor, Umeå Plant Science Centre, Department of Plant Physiology, Umeå UniversityVerified email at umu.se
Vincent DaubincnrsVerified email at univ-lyon1.fr
Sayyed Auwn MuhammadLead Data Scientist at EricssonVerified email at ericsson.com
Shruti RastogiColumbia University Medical Center, New YorkVerified email at rostlab.org
David A. LiberlesTemple UniversityVerified email at temple.edu
Katharina DittmarUniversity at BuffaloVerified email at buffalo.edu
Sophia HoberProfessorVerified email at kth.se
Alberto PolicritiUniversity of UdineVerified email at uniud.it
Christina DivneKTH Royal Institute of TechnologyVerified email at kth.se
Riccardo VicedominiCNRS, IRISAVerified email at irisa.fr

Lars Arvestad

Stockholm University; Dept of Mathematics, and Swedish e-Science Research Center

Verified email at math.su.se - Homepage

Bioinformatics Computational Biology Genomics Evolution Phylogeny


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The Norway spruce genome sequence and conifer genome evolution B Nystedt, NR Street, A Wetterbom, A Zuccolo, YC Lin, DG Scofield, ... Nature 497 (7451), 579-584, 2013	1475	2013
Evolution after gene duplication: models, mechanisms, sequences, systems, and organisms C Roth, S Rastogi, L Arvestad, K Dittmar, S Light, D Ekman, DA Liberles Journal of Experimental Zoology Part B: Molecular and Developmental …, 2007	214	2007
Bayesian gene/species tree reconciliation and orthology analysis using MCMC L Arvestad, AC Berglund, J Lagergren, B Sennblad Bioinformatics 19 (suppl 1), i7, 2003	212	2003
Simultaneous Bayesian gene tree reconstruction and reconciliation analysis Ö Åkerborg, B Sennblad, L Arvestad, J Lagergren Proceedings of the National Academy of Sciences 106 (14), 5714, 2009	202	2009
The genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes S Djerbi, M Lindskog, L Arvestad, F Sterky, TT Teeri Planta 221, 739-746, 2005	182	2005
BESST-Efficient scaffolding of large fragmented assemblies K Sahlin, F Vezzi, B Nystedt, J Lundeberg, L Arvestad BMC Bioinformatics 15 (1), 281, 2014	163	2014
Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution L Arvestad, AC Berglund, J Lagergren, B Sennblad Proceedings of the eighth annual international conference on Research in …, 2004	161	2004
Genome-wide survey for biologically functional pseudogenes Ö Svensson, L Arvestad, J Lagergren PLoS computational biology 2 (5), e46, 2006	100	2006
The gene evolution model and computing its associated probabilities L Arvestad, J Lagergren, B Sennblad Journal of the ACM (JACM) 56 (2), 7, 2009	99	2009
A Bayesian method for analyzing lateral gene transfer J Sjöstrand, A Tofigh, V Daubin, L Arvestad, B Sennblad, J Lagergren Systematic Biology 63 (3), 409-420, 2014	93	2014
GAM-NGS: genomic assemblies merger for next generation sequencing R Vicedomini, F Vezzi, S Scalabrin, L Arvestad, A Policriti BMC Bioinformatics 14 (Suppl 7), S6, 2013	86	2013
MAP20, a microtubule-associated protein in the secondary cell walls of hybrid aspen, is a target of the cellulose synthesis inhibitor 2, 6-dichlorobenzonitrile AS Rajangam, M Kumar, H Aspeborg, G Guerriero, L Arvestad, P Pansri, ... Plant Physiology 148 (3), 1283-1294, 2008	86	2008
Classification of DNA sequences using Bloom filters H Stranneheim, M Käller, T Allander, B Andersson, L Arvestad, ... Bioinformatics 26 (13), 1595-1600, 2010	77	2010
mtDNA tandem repeats in domestic dogs and wolves: mutation mechanism studied by analysis of the sequence of imperfect repeats P Savolainen, L Arvestad, J Lundeberg Molecular biology and evolution 17 (4), 474-488, 2000	72	2000
DLRS: gene tree evolution in light of a species tree J Sjöstrand, B Sennblad, L Arvestad, J Lagergren Bioinformatics 28 (22), 2994-2995, 2012	47	2012
GenPhyloData: realistic simulation of gene family evolution J Sjöstrand, L Arvestad, J Lagergren, B Sennblad BMC Bioinformatics 14 (1), 209, 2013	44	2013
Assembly scaffolding with PE-contaminated mate-pair libraries K Sahlin, R Chikhi, L Arvestad Bioinformatics 32 (13), 1925-1932, 2016	42	2016
The mitogenome of Norway spruce and a reappraisal of mitochondrial recombination in plants AR Sullivan, Y Eldfjell, B Schiffthaler, N Delhomme, T Asp, KH Hebelstrup, ... Genome biology and evolution 12 (1), 3586-3598, 2020	39	2020
A novel method for forensic DNA investigations: repeat-type sequence analysis of tandemly repeated mtDNA in domestic dogs P Savolainen, J Lundberg, L Arvestad Journal of Forensic Sciences 45 (5), 990-999, 2000	37	2000
Identification of the cellulose synthase genes from the Oomycete Saprolegnia monoica and effect of cellulose synthesis inhibitors on gene expression and enzyme activity J Fugelstad, J Bouzenzana, S Djerbi, G Guerriero, I Ezcurra, TT Teeri, ... Fungal Genetics and Biology 46 (10), 759-767, 2009	33	2009

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