| Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism AJ Willsey, SJ Sanders, M Li, S Dong, AT Tebbenkamp, RA Muhle, ... Cell 155 (5), 997-1007, 2013 | 1006 | 2013 |
| Direct identification of hundreds of expression-modulating variants using a multiplexed reporter assay R Tewhey, D Kotliar, DS Park, B Liu, S Winnicki, SK Reilly, KG Andersen, ... Cell 165 (6), 1519-1529, 2016 | 500 | 2016 |
| The autism-associated chromatin modifier CHD8 regulates other autism risk genes during human neurodevelopment J Cotney, RA Muhle, SJ Sanders, L Liu, AJ Willsey, W Niu, W Liu, L Klei, ... Nature communications 6 (1), 6404, 2015 | 379 | 2015 |
| Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events JE Lemieux, KJ Siddle, BM Shaw, C Loreth, SF Schaffner, ... Science 371 (6529), eabe3261, 2021 | 306* | 2021 |
| Evolutionary changes in promoter and enhancer activity during human corticogenesis SK Reilly, J Yin, AE Ayoub, D Emera, J Leng, J Cotney, R Sarro, P Rakic, ... Science 347 (6226), 1155-1159, 2015 | 306 | 2015 |
| The evolution of lineage-specific regulatory activities in the human embryonic limb J Cotney, J Leng, J Yin, SK Reilly, LE DeMare, D Emera, AE Ayoub, ... Cell 154 (1), 185-196, 2013 | 260 | 2013 |
| Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb J Cotney, J Leng, S Oh, LE DeMare, SK Reilly, MB Gerstein, JP Noonan Genome research 22 (6), 1069-1080, 2012 | 159 | 2012 |
| The genomic landscape of cohesin-associated chromatin interactions LE DeMare, J Leng, J Cotney, SK Reilly, J Yin, R Sarro, JP Noonan Genome research 23 (8), 1224-1234, 2013 | 152 | 2013 |
| Evolutionary constraint and innovation across hundreds of placental mammals MJ Christmas, IM Kaplow, DP Genereux, MX Dong, GM Hughes, X Li, ... Science 380 (6643), eabn3943, 2023 | 136 | 2023 |
| Genome-wide functional screen of 3′ UTR variants uncovers causal variants for human disease and evolution D Griesemer, JR Xue, SK Reilly, JC Ulirsch, K Kukreja, JR Davis, M Kanai, ... Cell 184 (20), 5247-5260. e19, 2021 | 133 | 2021 |
| Origin and evolution of developmental enhancers in the mammalian neocortex D Emera, J Yin, SK Reilly, J Gockley, JP Noonan Proceedings of the National Academy of Sciences 113 (19), E2617-E2626, 2016 | 102 | 2016 |
| Massively parallel discovery of human-specific substitutions that alter enhancer activity S Uebbing, J Gockley, SK Reilly, AA Kocher, E Geller, N Gandotra, ... Proceedings of the National Academy of Sciences 118 (2), e2007049118, 2021 | 100 | 2021 |
| Integrating gene annotation with orthology inference at scale BM Kirilenko, C Munegowda, E Osipova, D Jebb, V Sharma, M Blumer, ... Science 380 (6643), eabn3107, 2023 | 74 | 2023 |
| Leveraging base-pair mammalian constraint to understand genetic variation and human disease PF Sullivan, JRS Meadows, S Gazal, BDN Phan, X Li, DP Genereux, ... Science 380 (6643), eabn2937, 2023 | 71 | 2023 |
| A genomic timescale for placental mammal evolution NM Foley, VC Mason, AJ Harris, KR Bredemeyer, J Damas, HA Lewin, ... Science 380 (6643), eabl8189, 2023 | 68 | 2023 |
| Insights from complex trait fine-mapping across diverse populations M Kanai, JC Ulirsch, J Karjalainen, M Kurki, KJ Karczewski, E Fauman, ... medrxiv, 2021.09. 03.21262975, 2021 | 66 | 2021 |
| Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR–FlowFISH SK Reilly, SJ Gosai, A Gutierrez, A Mackay-Smith, JC Ulirsch, M Kanai, ... Nature genetics 53 (8), 1166-1176, 2021 | 65* | 2021 |
| Evolution of gene regulation in humans SK Reilly, JP Noonan Annual review of genomics and human genetics 17 (1), 45-67, 2016 | 65 | 2016 |
| Transmission from vaccinated individuals in a large SARS-CoV-2 Delta variant outbreak KJ Siddle, LA Krasilnikova, GK Moreno, SF Schaffner, J Vostok, ... Cell 185 (3), 485-492. e10, 2022 | 61* | 2022 |
| Three-dimensional genome rewiring in loci with human accelerated regions KC Keough, S Whalen, F Inoue, PF Przytycki, T Fair, C Deng, M Steyert, ... Science 380 (6643), eabm1696, 2023 | 56 | 2023 |
James P NoonanAlbert E. Kent Professor of Genetics and Professor of Neuroscience, Yale School of MedicineVerified email at yale.edu
