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Timothy P Daley
Timothy P Daley
Super Secret BioTech Startup
Verified email at epic-bio.com - Homepage
Title
Cited by
Cited by
Year
Predicting the molecular complexity of sequencing libraries
T Daley, AD Smith
Nature methods 10 (4), 325, 2013
3132013
CRISPR-mediated live imaging of genome editing and transcription
H Wang, M Nakamura, TR Abbott, D Zhao, K Luo, C Yu, CM Nguyen, A Lo, ...
Science 365 (6459), 1301-1305, 2019
2272019
CRISPR-mediated programmable 3D genome positioning and nuclear organization
H Wang, X Xu, CM Nguyen, Y Liu, Y Gao, X Lin, T Daley, NH Kipniss, ...
Cell 175 (5), 1405-1417. e14, 2018
1872018
CRISPR activation screens systematically identify factors that drive neuronal fate and reprogramming
Y Liu, C Yu, TP Daley, F Wang, WS Cao, S Bhate, X Lin, C Still II, H Liu, ...
Cell stem cell 23 (5), 758-771. e8, 2018
1762018
Unsupervised clustering and epigenetic classification of single cells
M Zamanighomi, Z Lin, T Daley, X Chen, Z Duren, A Schep, WJ Greenleaf, ...
Nature communications 9 (1), 1-8, 2018
1042018
Applications of species accumulation curves in large-scale biological data analysis
C Deng, T Daley, A Smith
Quantitative Biology 3 (3), 135-144, 2015
692015
Modeling genome coverage in single-cell sequencing
T Daley, AD Smith
Bioinformatics 30 (22), 3159-3165, 2014
642014
A benchmark of algorithms for the analysis of pooled CRISPR screens
S Bodapati, TP Daley, X Lin, J Zou, LS Qi
Genome Biology 21 (1), 1-13, 2020
602020
Sexual selection targets cetacean pelvic bones
JP Dines, E Otárola‐Castillo, P Ralph, J Alas, T Daley, AD Smith, ...
Evolution 68 (11), 3296-3306, 2014
572014
ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues
S Mangul, HT Yang, N Strauli, F Gruhl, HT Porath, K Hsieh, L Chen, ...
Genome biology 19 (1), 36, 2018
502018
Fulminant Clostridium difficile infection: An association with prior appendectomy?
J Clanton, M Subichin, K Drolshagen, T Daley, MS Firstenberg
World journal of gastrointestinal surgery 5 (8), 233, 2013
432013
CRISPhieRmix: a hierarchical mixture model for CRISPR pooled screens
TP Daley, Z Lin, X Lin, Y Liu, WH Wong, LS Qi
Genome biology 19 (1), 1-13, 2018
392018
GEMINI: a variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens
M Zamanighomi, SS Jain, T Ito, D Pal, TP Daley, WR Sellers
Genome biology 20 (1), 1-10, 2019
382019
Model-based approach to the joint analysis of single-cell data on chromatin accessibility and gene expression
Z Lin, M Zamanighomi, T Daley, S Ma, WH Wong
Statistical Science, 2020
192020
Patience is a virtue: an argument for delayed surgical intervention in fulminant Clostridium difficile colitis
J Clanton, R Fawley, N Haller, T Daley, J Porter, C Paranjape, H Bonilla
The American Surgeon 80 (6), 614-619, 2014
122014
Computational Methods for Analysis of Large-Scale CRISPR Screens
X Lin, A Chemparathy, M La Russa, T Daley, LS Qi
Annual Review of Biomedical Data Science 3, 137-162, 2020
82020
Estimating the number of species to attain sufficient representation in a random sample
C Deng, T Daley, P Calabrese, J Ren, AD Smith
arXiv preprint arXiv:1607.02804, 2016
72016
Predicting the Number of Bases to Attain Sufficient Coverage in High-Throughput Sequencing Experiments
C Deng, T Daley, P Calabrese, J Ren, AD Smith
Journal of Computational Biology 27 (7), 1130-1143, 2020
52020
Molecular heterogeneity in large-scale biological data: Techniques and applications
C Deng, T Daley, GDS Brandine, AD Smith
Annual Review of Biomedical Data Science 2, 39-67, 2019
52019
Non-parametric models for large capture-recapture experiments with applications to DNA sequencing
TP Daley
https://digitallibrary.usc.edu/asset-management/2A3BF16D04ZQ, 2014
52014
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