| The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ... Nucleic acids research 33 (17), 5691-5702, 2005 | 2280 | 2005 |
| Global reconstruction of the human metabolic network based on genomic and bibliomic data NC Duarte, SA Becker, N Jamshidi, I Thiele, ML Mo, TD Vo, R Srivas, ... Proceedings of the National Academy of Sciences 104 (6), 1777-1782, 2007 | 1642 | 2007 |
| A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013 | 1177 | 2013 |
| A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013 | 1177 | 2013 |
| Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ 661 and proposing alternative drug targets N Jamshidi, BØ Palsson BMC systems biology 1, 1-20, 2007 | 350 | 2007 |
| Xanthine oxidase activity associated with arterial blood pressure in spontaneously hypertensive rats H Suzuki, FA DeLano, DA Parks, N Jamshidi, DN Granger, H Ishii, ... Proceedings of the National Academy of Sciences 95 (8), 4754-4759, 1998 | 314 | 1998 |
| Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions A Bordbar, NE Lewis, J Schellenberger, BØ Palsson, N Jamshidi Molecular systems biology 6 (1), 422, 2010 | 306 | 2010 |
| Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its … I Thiele, N Jamshidi, RMT Fleming, BØ Palsson PLoS computational biology 5 (3), e1000312, 2009 | 242 | 2009 |
| Behind the numbers: decoding molecular phenotypes with radiogenomics—guiding principles and technical considerations MD Kuo, N Jamshidi Radiology 270 (2), 320-325, 2014 | 227 | 2014 |
| Formulating genome‐scale kinetic models in the post‐genome era N Jamshidi, BØ Palsson Molecular systems biology 4 (1), 171, 2008 | 224 | 2008 |
| A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1 MI Sigurdsson, N Jamshidi, E Steingrimsson, I Thiele, BØ Palsson BMC systems biology 4, 1-13, 2010 | 199 | 2010 |
| Mass action stoichiometric simulation models: incorporating kinetics and regulation into stoichiometric models N Jamshidi, BØ Palsson Biophysical journal 98 (2), 175-185, 2010 | 154 | 2010 |
| Illuminating radiogenomic characteristics of glioblastoma multiforme through integration of MR imaging, messenger RNA expression, and DNA copy number variation N Jamshidi, M Diehn, M Bredel, MD Kuo Radiology 270 (1), 1-2, 2014 | 140 | 2014 |
| Dynamic simulation of the human red blood cell metabolic network N Jamshidi, JS Edwards, T Fahland, GM Church, BO Palsson Bioinformatics 17 (3), 286-287, 2001 | 137 | 2001 |
| Breast cancer: radiogenomic biomarker reveals associations among dynamic contrast-enhanced MR imaging, long noncoding RNA, and metastasis S Yamamoto, W Han, Y Kim, L Du, N Jamshidi, D Huang, JH Kim, MD Kuo Radiology 275 (2), 384-392, 2015 | 128 | 2015 |
| iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states A Bordbar, N Jamshidi, BO Palsson BMC systems biology 5, 1-12, 2011 | 118 | 2011 |
| Personalized whole-cell kinetic models of metabolism for discovery in genomics and pharmacodynamics A Bordbar, D McCloskey, DC Zielinski, N Sonnenschein, N Jamshidi, ... Cell systems 1 (4), 283-292, 2015 | 112 | 2015 |
| Systems biology analysis of drivers underlying hallmarks of cancer cell metabolism DC Zielinski, N Jamshidi, AJ Corbett, A Bordbar, A Thomas, BO Palsson Scientific reports 7 (1), 41241, 2017 | 103 | 2017 |
| Nutritional systems biology modeling: from molecular mechanisms to physiology AA de Graaf, AP Freidig, B De Roos, N Jamshidi, M Heinemann, ... PLoS computational biology 5 (11), e1000554, 2009 | 93 | 2009 |
| Microelectronic array devices and techniques for electric field enhanced DNA hybridization in low‐conductance buffers C Gurtner, E Tu, N Jamshidi, RW Haigis, TJ Onofrey, CF Edman, ... Electrophoresis 23 (10), 1543-1550, 2002 | 89 | 2002 |
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