| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases R Caspi, T Altman, R Billington, K Dreher, H Foerster, CA Fulcher, ... Nucleic acids research 42 (D1), D459-D471, 2014 | 920 | 2014 |
| The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases R Caspi, H Foerster, CA Fulcher, P Kaipa, M Krummenacker, ... Nucleic acids research 36 (suppl_1), D623-D631, 2007 | 734 | 2007 |
| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases R Caspi, R Billington, L Ferrer, H Foerster, CA Fulcher, IM Keseler, ... Nucleic acids research 44 (D1), D471-D480, 2016 | 685 | 2016 |
| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases R Caspi, T Altman, K Dreher, CA Fulcher, P Subhraveti, IM Keseler, ... Nucleic acids research 40 (D1), D742-D753, 2012 | 658 | 2012 |
| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases R Caspi, T Altman, JM Dale, K Dreher, CA Fulcher, F Gilham, P Kaipa, ... Nucleic acids research 38 (suppl_1), D473-D479, 2010 | 527 | 2010 |
| Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology PD Karp, SM Paley, M Krummenacker, M Latendresse, JM Dale, TJ Lee, ... Briefings in bioinformatics 11 (1), 40-79, 2010 | 512 | 2010 |
| MetaCyc: a multiorganism database of metabolic pathways and enzymes R Caspi, H Foerster, CA Fulcher, R Hopkinson, J Ingraham, P Kaipa, ... Nucleic acids research 34 (suppl_1), D511-D516, 2006 | 428 | 2006 |
| The MetaCyc database of metabolic pathways and enzymes R Caspi, R Billington, CA Fulcher, IM Keseler, A Kothari, ... Nucleic acids research 46 (D1), D633-D639, 2018 | 338 | 2018 |
| The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 IM Keseler, A Mackie, A Santos-Zavaleta, R Billington, ... Nucleic acids research 45 (D1), D543-D550, 2017 | 322 | 2017 |
| Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology PD Karp, M Latendresse, SM Paley, M Krummenacker, QD Ong, ... Briefings in bioinformatics 17 (5), 877-890, 2016 | 289 | 2016 |
| The pathway tools pathway prediction algorithm PD Karpe, M Latendresse, R Caspi Standards in genomic sciences 5 (3), 424-429, 2011 | 172 | 2011 |
| The BioCyc collection of microbial genomes and metabolic pathways PD Karp, R Billington, R Caspi, CA Fulcher, M Latendresse, A Kothari, ... Briefings in Bioinformatics 20 (4), 1085-1093, 2019 | 145 | 2019 |
| Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants P Zhang, K Dreher, A Karthikeyan, A Chi, A Pujar, R Caspi, P Karp, ... Plant Physiology 153 (4), 1479-1491, 2010 | 128 | 2010 |
| The MetaCyc database of metabolic pathways and enzymes-a 2019 update R Caspi, R Billington, IM Keseler, A Kothari, M Krummenacker, ... Nucleic acids research 48 (D1), D445-D453, 2020 | 117 | 2020 |
| c-type cytochromes and manganese oxidation in Pseudomonas putida MnB1 R Caspi, BM Tebo, MG Haygood Applied and environmental Microbiology 64 (10), 3549-3555, 1998 | 115 | 1998 |
| A systematic comparison of the MetaCyc and KEGG pathway databases T Altman, M Travers, A Kothari, R Caspi, PD Karp BMC bioinformatics 14 (1), 112, 2013 | 112 | 2013 |
| A broad host range replicon with different requirements for replication initiation in three bacterial species R Caspi, M Pacek, G Consiglieri, DR Helinski, A Toukdarian, I Konieczny The EMBO Journal 20 (12), 3262-3271, 2001 | 65 | 2001 |
| A survey of metabolic databases emphasizing the MetaCyc family PD Karp, R Caspi Archives of toxicology 85 (9), 1015-1033, 2011 | 64 | 2011 |
| Sequence analysis of a 101-kilobase plasmid required for agar degradation by a Microscillaisolate Z Zhong, A Toukdarian, D Helinski, V Knauf, S Sykes, JE Wilkinson, ... Applied and Environmental Microbiology 67 (12), 5771-5779, 2001 | 55 | 2001 |
| Unusual ribulose-1, 5-bisphosphate carboxylase/oxygenase genes from a marine manganese-oxidizing bacterium R Caspi, MG Haygood, BM Tebo Microbiology 142 (9), 2549-2559, 1996 | 49 | 1996 |
