Ron Caspi
Ron Caspi
Verified email at sri.com
Title
Cited by
Cited by
Year
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
R Caspi, T Altman, R Billington, K Dreher, H Foerster, CA Fulcher, ...
Nucleic acids research 42 (D1), D459-D471, 2014
9202014
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
R Caspi, H Foerster, CA Fulcher, P Kaipa, M Krummenacker, ...
Nucleic acids research 36 (suppl_1), D623-D631, 2007
7342007
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
R Caspi, R Billington, L Ferrer, H Foerster, CA Fulcher, IM Keseler, ...
Nucleic acids research 44 (D1), D471-D480, 2016
6852016
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
R Caspi, T Altman, K Dreher, CA Fulcher, P Subhraveti, IM Keseler, ...
Nucleic acids research 40 (D1), D742-D753, 2012
6582012
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
R Caspi, T Altman, JM Dale, K Dreher, CA Fulcher, F Gilham, P Kaipa, ...
Nucleic acids research 38 (suppl_1), D473-D479, 2010
5272010
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
PD Karp, SM Paley, M Krummenacker, M Latendresse, JM Dale, TJ Lee, ...
Briefings in bioinformatics 11 (1), 40-79, 2010
5122010
MetaCyc: a multiorganism database of metabolic pathways and enzymes
R Caspi, H Foerster, CA Fulcher, R Hopkinson, J Ingraham, P Kaipa, ...
Nucleic acids research 34 (suppl_1), D511-D516, 2006
4282006
The MetaCyc database of metabolic pathways and enzymes
R Caspi, R Billington, CA Fulcher, IM Keseler, A Kothari, ...
Nucleic acids research 46 (D1), D633-D639, 2018
3382018
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12
IM Keseler, A Mackie, A Santos-Zavaleta, R Billington, ...
Nucleic acids research 45 (D1), D543-D550, 2017
3222017
Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology
PD Karp, M Latendresse, SM Paley, M Krummenacker, QD Ong, ...
Briefings in bioinformatics 17 (5), 877-890, 2016
2892016
The pathway tools pathway prediction algorithm
PD Karpe, M Latendresse, R Caspi
Standards in genomic sciences 5 (3), 424-429, 2011
1722011
The BioCyc collection of microbial genomes and metabolic pathways
PD Karp, R Billington, R Caspi, CA Fulcher, M Latendresse, A Kothari, ...
Briefings in Bioinformatics 20 (4), 1085-1093, 2019
1452019
Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants
P Zhang, K Dreher, A Karthikeyan, A Chi, A Pujar, R Caspi, P Karp, ...
Plant Physiology 153 (4), 1479-1491, 2010
1282010
The MetaCyc database of metabolic pathways and enzymes-a 2019 update
R Caspi, R Billington, IM Keseler, A Kothari, M Krummenacker, ...
Nucleic acids research 48 (D1), D445-D453, 2020
1172020
c-type cytochromes and manganese oxidation in Pseudomonas putida MnB1
R Caspi, BM Tebo, MG Haygood
Applied and environmental Microbiology 64 (10), 3549-3555, 1998
1151998
A systematic comparison of the MetaCyc and KEGG pathway databases
T Altman, M Travers, A Kothari, R Caspi, PD Karp
BMC bioinformatics 14 (1), 112, 2013
1122013
A broad host range replicon with different requirements for replication initiation in three bacterial species
R Caspi, M Pacek, G Consiglieri, DR Helinski, A Toukdarian, I Konieczny
The EMBO Journal 20 (12), 3262-3271, 2001
652001
A survey of metabolic databases emphasizing the MetaCyc family
PD Karp, R Caspi
Archives of toxicology 85 (9), 1015-1033, 2011
642011
Sequence analysis of a 101-kilobase plasmid required for agar degradation by a Microscillaisolate
Z Zhong, A Toukdarian, D Helinski, V Knauf, S Sykes, JE Wilkinson, ...
Applied and Environmental Microbiology 67 (12), 5771-5779, 2001
552001
Unusual ribulose-1, 5-bisphosphate carboxylase/oxygenase genes from a marine manganese-oxidizing bacterium
R Caspi, MG Haygood, BM Tebo
Microbiology 142 (9), 2549-2559, 1996
491996
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Articles 1–20