| De novo assembly and analysis of RNA-seq data G Robertson, J Schein, R Chiu, R Corbett, M Field, SD Jackman, ... Nature methods 7 (11), 909-912, 2010 | 1183 | 2010 |
| Subgroup-specific structural variation across 1,000 medulloblastoma genomes PA Northcott, DJH Shih, J Peacock, L Garzia, A Sorana Morrissy, ... Nature 488 (7409), 49-56, 2012 | 959 | 2012 |
| Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data I Birol, A Raymond, SD Jackman, S Pleasance, R Coope, GA Taylor, ... Bioinformatics 29 (12), 1492-1497, 2013 | 444 | 2013 |
| Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism RL Warren, CI Keeling, MMS Yuen, A Raymond, GA Taylor, ... The Plant Journal 83 (2), 189-212, 2015 | 233 | 2015 |
| Sealer: a scalable gap-closing application for finishing draft genomes D Paulino, RL Warren, BP Vandervalk, A Raymond, SD Jackman, I Birol BMC bioinformatics 16, 1-8, 2015 | 165 | 2015 |
| BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters J Chu, S Sadeghi, A Raymond, SD Jackman, KM Nip, R Mar, ... Bioinformatics 30 (23), 3402-3404, 2014 | 115 | 2014 |
| Organellar Genomes of White Spruce ( Picea glauca ): Assembly and Annotation SD Jackman, RL Warren, EA Gibb, BP Vandervalk, H Mohamadi, J Chu, ... Genome Biology and Evolution 8 (1), 29-41, 2016 | 62 | 2016 |
| Kleat: cleavage site analysis of transcriptomes I Birol, A Raymond, R Chiu, KM Nip, SD Jackman, M Kreitzman, ... Pacific Symposium on Biocomputing Co-Chairs, 347-358, 2014 | 29 | 2014 |
| Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph BP Vandervalk, SD Jackman, A Raymond, H Mohamadi, C Yang, ... 2014 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2014 | 19 | 2014 |
| Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies L Swanson, G Robertson, KL Mungall, YS Butterfield, R Chiu, RD Corbett, ... BMC genomics 14, 1-19, 2013 | 18 | 2013 |
| DIDA: Distributed indexing dispatched alignment H Mohamadi, BP Vandervalk, A Raymond, SD Jackman, J Chu, ... PloS one 10 (4), e0126409, 2015 | 15 | 2015 |
| Spaced seed data structures for de novo assembly I Birol, J Chu, H Mohamadi, SD Jackman, K Raghavan, BP Vandervalk, ... International journal of genomics 2015, 2015 | 11 | 2015 |
| Scaffolding a genome sequence assembly using ABySS SD Jackman, AG Raymond, I Birol | 3 | 2021 |
| Spaced seed data structures I Birol, H Mohamadi, A Raymond, K Raghavan, J Chu, BP Vandervalk, ... 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2014 | 2 | 2014 |
| Research Article Spaced Seed Data Structures for De Novo Assembly I Birol, J Chu, H Mohamadi, SD Jackman, K Raghavan, BP Vandervalk, ... | | 2015 |
