Vân Anh Huynh-Thu
Vân Anh Huynh-Thu
University of Liège
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SCENIC: single-cell regulatory network inference and clustering
S Aibar, CB González-Blas, T Moerman, VA Huynh-Thu, H Imrichova, ...
Nature methods 14 (11), 1083, 2017
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature Methods, 2012
Inferring regulatory networks from expression data using tree-based methods
VA Huynh-Thu, A Irrthum, L Wehenkel, P Geurts
PloS one 5 (9), e12776, 2010
MicroRNAs profiling in murine models of acute and chronic asthma: a relationship with mRNAs targets
N Garbacki, E Di Valentin, VA Huynh-Thu, P Geurts, A Irrthum, C Crahay, ...
PLoS One 6 (1), e16509, 2011
dynGENIE3: dynamical GENIE3 for the inference of gene networks from time series expression data
VA Huynh-Thu, P Geurts
Scientific reports 8 (1), 3384, 2018
Gene regulatory network inference: an introductory survey
VA Huynh-Thu, G Sanguinetti
Gene Regulatory Networks, 1-23, 2019
Combining tree-based and dynamical systems for the inference of gene regulatory networks
VA Huynh-Thu, G Sanguinetti
Bioinformatics, btu863, 2015
Statistical interpretation of machine learning-based feature importance scores for biomarker discovery
VA Huynh-Thu, Y Saeys, L Wehenkel, P Geurts
Bioinformatics 28 (13), 1766-1774, 2012
Identification of a microRNA landscape targeting the PI3K/Akt signaling pathway in inflammation-induced colorectal carcinogenesis
C Josse, N Bouznad, P Geurts, A Irrthum, VA Huynh-Thu, L Servais, ...
American Journal of Physiology-Gastrointestinal and Liver Physiology 306 (3 …, 2014
Mapping Gene Regulatory Networks in Drosophila Eye Development by Large-Scale Transcriptome Perturbations and Motif Inference
D Potier, K Davie, G Hulselmans, M Naval Sanchez, L Haagen, ...
Cell reports, 2014
NIMEFI: Gene Regulatory Network Inference using Multiple Ensemble Feature Importance Algorithms
J Ruyssinck, VA Huynh-Thu, P Geurts, T Dhaene, P Demeester, Y Saeys
PLOS ONE 9 (3), e92709, 2014
Myelin-derived lipids modulate macrophage activity by liver X receptor activation
JFJ Bogie, S Timmermans, VA Huynh-Thu, A Irrthum, HJM Smeets, ...
PloS one 7 (9), e44998, 2012
Strand‐specific, high‐resolution mapping of modified RNA polymerase II
L Milligan, VA Huynh‐Thu, C Delan‐Forino, A Tuck, E Petfalski, ...
Molecular systems biology 12 (6), 874, 2016
Gene regulatory networks: Methods and protocols
VA Huynh-Thu
Humana Press, 2019
Unsupervised Gene Network Inference with Decision Trees and Random Forests
VA Huynh-Thu, P Geurts
Gene Regulatory Networks, 195-215, 2019
Discovery of biomarker candidates associated with the risk of short-term and mid/long-term relapse after infliximab withdrawal in Crohn’s patients: a proteomics-based study
N Pierre, D Baiwir, VA Huynh-Thu, G Mazzucchelli, N Smargiasso, ...
Gut 70 (8), 1450-1457, 2021
Bridging physiological and evolutionary time‐scales in a gene regulatory network
G Marchand, VA Huynh‐Thu, NC Kane, S Arribat, D Varès, D Rengel, ...
New Phytologist 203 (2), 685-696, 2014
Exploiting tree-based variable importances to selectively identify relevant variables
VA Huynh-Thu, L Wehenkel, P Geurts
JMLR: Workshop and Conference Proceedings 4, 60-73, 2008
Distinct blood protein profiles associated with the risk of short-term and mid/long-term clinical relapse in patients with Crohn’s disease stopping infliximab: when the …
N Pierre, VA Huynh-Thu, T Marichal, M Allez, Y Bouhnik, D Laharie, ...
Gut, 2022
From global to local mdi variable importances for random forests and when they are shapley values
A Sutera, G Louppe, VA Huynh-Thu, L Wehenkel, P Geurts
Advances in Neural Information Processing Systems 34, 3533-3543, 2021
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