Isaac Crespo
Isaac Crespo
SIB Swiss Institute of Bioinformatics
Geverifieerd e-mailadres voor unil.ch
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Jaar
Integrating pathways of Parkinson's disease in a molecular interaction map
KA Fujita, M Ostaszewski, Y Matsuoka, S Ghosh, E Glaab, C Trefois, ...
Molecular neurobiology 49 (1), 88-102, 2014
1692014
A novel network integrating a miRNA-203/SNAI1 feedback loop which regulates epithelial to mesenchymal transition
M Moes, A Le Béchec, I Crespo, C Laurini, A Halavatyi, G Vetter, ...
PloS one 7 (4), e35440, 2012
1682012
Cooperative development of logical modelling standards and tools with CoLoMoTo
A Naldi, P Monteiro, C Müssel, TCLM Tools, K Hans A., D Thieffry, ...
Bioinformatics, 2015
512015
Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks
I Crespo, TM Perumal, W Jurkowski, A Del Sol
BMC systems biology 7 (1), 1-14, 2013
432013
A General Strategy for Cellular Reprogramming: The Importance of Transcription Factor Cross‐Repression
I Crespo, A del Sol
Stem Cells, DOI: 10.1002/stem.1473, 2013
382013
Predicting missing expression values in gene regulatory networks using a discrete logic modeling optimization guided by network stable states
I Crespo, A Krishna, A Le Bechec, A del Sol
Nucleic acids research 41 (1), e8-e8, 2013
302013
Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease
I Crespo, K Roomp, W Jurkowski, H Kitano, A del Sol
BMC Systems Biology 6 (1), 132, 2012
282012
Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method
J Dorier, I Crespo, A Niknejad, R Liechti, M Ebeling, I Xenarios
BMC bioinformatics 17 (1), 410, 2016
252016
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Members
Nucleic acid research, 2015
23*2015
Deciphering the dynamic transcriptional and post-transcriptional networks of macrophages in the healthy heart and after myocardial injury
W Walter, L Alonso-Herranz, V Trappetti, I Crespo, M Ibberson, ...
Cell reports 23 (2), 622-636, 2018
222018
Analysis of the dynamic co-expression network of heart regeneration in the zebrafish
S Rodius, G Androsova, L Götz, R Liechti, I Crespo, S Merz, PV Nazarov, ...
Scientific reports 6, 26822, 2016
222016
Global DNA methylation and transcriptional analyses of human ESC-derived cardiomyocytes
Y Gu, GH Liu, N Plongthongkum, C Benner, F Yi, J Qu, K Suzuki, J Yang, ...
Protein & Cell, 2013
202013
Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics
MN Loviglio, CR Beck, JJ White, M Leleu, T Harel, N Guex, A Niknejad, ...
Genome medicine 8 (1), 1-15, 2016
182016
SourceData: a semantic platform for curating and searching figures
IXTL Robin Liechti, Nancy George, Lou Götz, Sara El-Gebali, Anastasia ...
Nature methods 14, 1021–1022, 2017
172017
Angiogenic activity of breast cancer patients’ monocytes reverted by combined use of systems modeling and experimental approaches
N Guex, I Crespo, S Bron, A Ifticene-Treboux, E Faes-van’t Hull, ...
PLoS computational biology 11 (3), e1004050, 2015
162015
Discrete logic modelling optimization to contextualize prior knowledge networks using PRUNET
A Rodriguez, I Crespo, G Androsova, A del Sol
PloS one 10 (6), e0127216, 2015
122015
A Primer-Extension Assay for simultaneous use in cattle Genotype Assisted Selection, parentage and traceability analysis
N Sevane, I Crespo, J Cańón, S Dunner
Livestock Science 137 (1-3), 141-150, 2011
92011
Modelling approaches to discovery in the tumor microenvironment
I Crespo, G Coukos, M Doucey, I Xenarios
J. Cancer Immunol. Ther 1, 23-37, 2018
62018
Identifying biological mechanisms for favorable cancer prognosis using non-hypothesis-driven iterative survival analysis
I Crespo, L Götz, R Liechti, G Coukos, MA Doucey, I Xenarios
NPJ systems biology and applications 2 (1), 1-11, 2016
52016
PPAR γ population shift produces disease-related changes in molecular networks associated with metabolic syndrome
W Jurkowski, K Roomp, I Crespo, JG Schneider, A Del Sol
Cell death & disease 2 (8), e192-e192, 2011
52011
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Artikelen 1–20