Michael Brudno
Michael Brudno
Professor of Computer Science, University of Toronto; Chief Data Scientist, UHN
Verified email at cs.toronto.edu
Title
Cited by
Cited by
Year
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
RA Gibbs, et al (Rat Genome Sequencing Consortium)
Nature 428 (6982), 493-521, 2004
22842004
The genetic landscape of a cell
M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ...
science 327 (5964), 425-431, 2010
22312010
ProbCons: Probabilistic consistency-based multiple sequence alignment
CB Do, MSP Mahabhashyam, M Brudno, S Batzoglou
Genome research 15 (2), 330-340, 2005
13622005
LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA
M Brudno, CB Do, GM Cooper, MF Kim, E Davydov, ED Green, A Sidow, ...
Genome research 13 (4), 721-731, 2003
12482003
VISTA: visualizing global DNA sequence alignments of arbitrary length
C Mayor, M Brudno, JR Schwartz, A Poliakov, EM Rubin, KA Frazer, ...
Bioinformatics 16 (11), 1046-1047, 2000
10142000
Similarity network fusion for aggregating data types on a genomic scale
B Wang, AM Mezlini, F Demir, M Fiume, Z Tu, M Brudno, B Haibe-Kains, ...
Nature methods 11 (3), 333-337, 2014
10132014
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data
S Köhler, SC Doelken, CJ Mungall, S Bauer, HV Firth, I Bailleul-Forestier, ...
Nucleic acids research 42 (D1), D966-D974, 2014
7762014
SHRiMP: accurate mapping of short color-space reads
SM Rumble, P Lacroute, AV Dalca, M Fiume, A Sidow, M Brudno
PLoS computational biology 5 (5), e1000386, 2009
7192009
Computational methods for discovering structural variation with next-generation sequencing
P Medvedev, M Stanciu, M Brudno
Nature methods 6 (11), S13-S20, 2009
6272009
The human phenotype ontology in 2017
S Köhler, NA Vasilevsky, M Engelstad, E Foster, J McMurry, S Aymé, ...
Nucleic acids research 45 (D1), D865-D876, 2017
5992017
Snowflock: rapid virtual machine cloning for cloud computing
HA Lagar-Cavilla, JA Whitney, AM Scannell, P Patchin, SM Rumble, ...
Proceedings of the 4th ACM European conference on Computer systems, 1-12, 2009
5612009
Genomic analysis of diffuse intrinsic pontine gliomas identifies three molecular subgroups and recurrent activating ACVR1 mutations
P Buczkowicz, C Hoeman, P Rakopoulos, S Pajovic, L Letourneau, ...
Nature genetics 46 (5), 451-456, 2014
4772014
Glocal alignment: finding rearrangements during alignment
M Brudno, S Malde, A Poliakov, CB Do, O Couronne, I Dubchak, ...
Bioinformatics 19 (suppl 1), i54, 2003
4282003
SHRiMP2: sensitive yet practical short read mapping
M David, M Dzamba, D Lister, L Ilie, M Brudno
Bioinformatics 27 (7), 1011-1012, 2011
3972011
Active conservation of noncoding sequences revealed by three-way species comparisons
I Dubchak, M Brudno, GG Loots, L Pachter, C Mayor, EM Rubin, ...
Genome research 10 (9), 1304-1306, 2000
3922000
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources
S Köhler, L Carmody, N Vasilevsky, JOB Jacobsen, D Danis, JP Gourdine, ...
Nucleic acids research 47 (D1), D1018-D1027, 2019
3902019
Conservation of core gene expression in vertebrate tissues
ET Chan, GT Quon, G Chua, T Babak, M Trochesset, RA Zirngibl, J Aubin, ...
Journal of biology 8 (3), 1-17, 2009
3782009
The Matchmaker Exchange: a platform for rare disease gene discovery
AA Philippakis, DR Azzariti, S Beltran, AJ Brookes, CA Brownstein, ...
Human mutation 36 (10), 915-921, 2015
3252015
Whole-genome sequencing expands diagnostic utility and improves clinical management in paediatric medicine
DJ Stavropoulos, D Merico, R Jobling, S Bowdin, N Monfared, ...
NPJ genomic medicine 1 (1), 1-9, 2016
2482016
Fast and sensitive multiple alignment of large genomic sequences
M Brudno, M Chapman, B Göttgens, S Batzoglou, B Morgenstern
BMC bioinformatics 4 (1), 1-11, 2003
2232003
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Articles 1–20