| Comprehensive molecular characterization of gastric adenocarcinoma Cancer Genome Atlas Research Network Nature 513 (7517), 202, 2014 | 5084 | 2014 |
| Somatic mutations at EZH2 Y641 act dominantly through a mechanism of selectively altered PRC2 catalytic activity, to increase H3K27 trimethylation DB Yap, J Chu, T Berg, M Schapira, SWG Cheng, A Moradian, RD Morin, ... Blood, The Journal of the American Society of Hematology 117 (8), 2451-2459, 2011 | 705 | 2011 |
| ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ... Genome research 27 (5), 768-777, 2017 | 615 | 2017 |
| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 300 | 2023 |
| NanoSim: nanopore sequence read simulator based on statistical characterization C Yang, J Chu, RL Warren, I Birol GigaScience 6 (4), gix010, 2017 | 216 | 2017 |
| ARCS: scaffolding genome drafts with linked reads S Yeo, L Coombe, RL Warren, J Chu, I Birol Bioinformatics 34 (5), 725-731, 2018 | 178 | 2018 |
| BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters J Chu, S Sadeghi, A Raymond, SD Jackman, KM Nip, R Mar, ... Bioinformatics 30 (23), 3402-3404, 2014 | 115 | 2014 |
| Tigmint: correcting assembly errors using linked reads from large molecules SD Jackman, L Coombe, J Chu, RL Warren, BP Vandervalk, S Yeo, Z Xue, ... BMC bioinformatics 19, 1-10, 2018 | 105 | 2018 |
| ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers L Coombe, J Zhang, BP Vandervalk, J Chu, SD Jackman, I Birol, ... BMC bioinformatics 19, 1-10, 2018 | 85 | 2018 |
| ntHash: recursive nucleotide hashing H Mohamadi, J Chu, BP Vandervalk, I Birol Bioinformatics 32 (22), 3492-3494, 2016 | 76 | 2016 |
| Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art J Chu, H Mohamadi, RL Warren, C Yang, I Birol Bioinformatics 33 (8), 1261-1270, 2017 | 65 | 2017 |
| Organellar Genomes of White Spruce ( Picea glauca ): Assembly and Annotation SD Jackman, RL Warren, EA Gibb, BP Vandervalk, H Mohamadi, J Chu, ... Genome Biology and Evolution 8 (1), 29-41, 2016 | 62 | 2016 |
| RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes KM Nip, R Chiu, C Yang, J Chu, H Mohamadi, RL Warren, I Birol Genome research 30 (8), 1191-1200, 2020 | 48* | 2020 |
| The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis GA Taylor, H Kirk, L Coombe, SD Jackman, J Chu, K Tse, D Cheng, ... Genes 9 (12), 598, 2018 | 38 | 2018 |
| ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs L Coombe, V Nikolić, J Chu, I Birol, RL Warren Bioinformatics 36 (12), 3885-3887, 2020 | 25 | 2020 |
| Kollector: transcript-informed, targeted de novo assembly of gene loci E Kucuk, J Chu, BP Vandervalk, SA Hammond, RL Warren, I Birol Bioinformatics 33 (12), 1782-1788, 2017 | 25 | 2017 |
| Konnector v2. 0: pseudo-long reads from paired-end sequencing data BP Vandervalk, C Yang, Z Xue, K Raghavan, J Chu, H Mohamadi, ... BMC Medical Genomics 8, 1-10, 2015 | 25 | 2015 |
| Jupiter Plot: A Circos-Based Tool to Visualize Genome Assembly Consistency (Version 1.0) J Chu Zenodo. Available online: https://zenodo. org/record/1241235#. XA92q2hKiUk …, 2018 | 22 | 2018 |
| Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph BP Vandervalk, SD Jackman, A Raymond, H Mohamadi, C Yang, ... 2014 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2014 | 19 | 2014 |
| Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters J Chu, H Mohamadi, E Erhan, J Tse, R Chiu, S Yeo, I Birol Proceedings of the National Academy of Sciences 117 (29), 16961-16968, 2020 | 18* | 2020 |
