Gemma L. Holliday
Gemma L. Holliday
Medicines Discovery Catapult
Geverifieerd e-mailadres voor md.catapult.org.uk
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InterPro in 2017—beyond protein family and domain annotations
RD Finn, TK Attwood, PC Babbitt, A Bateman, P Bork, AJ Bridge, ...
Nucleic acids research 45 (D1), D190-D199, 2017
10402017
Metal ions in biological catalysis: from enzyme databases to general principles
C Andreini, I Bertini, G Cavallaro, GL Holliday, JM Thornton
JBIC Journal of Biological Inorganic Chemistry 13 (8), 1205-1218, 2008
7202008
Small molecule subgraph detector (SMSD) toolkit
SA Rahman, M Bashton, GL Holliday, R Schrader, JM Thornton
Journal of cheminformatics 1 (1), 12, 2009
1642009
The structure–function linkage database
E Akiva, S Brown, DE Almonacid, AE Barber 2nd, AF Custer, MA Hicks, ...
Nucleic acids research 42 (D1), D521-D530, 2014
1622014
The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes
N Furnham, GL Holliday, TAP de Beer, JOB Jacobsen, WR Pearson, ...
Nucleic acids research 42 (D1), D485-D489, 2014
1442014
Understanding the functional roles of amino acid residues in enzyme catalysis
GL Holliday, JBO Mitchell, JM Thornton
Journal of molecular biology 390 (3), 560-577, 2009
1102009
EC-BLAST: a tool to automatically search and compare enzyme reactions
SA Rahman, SM Cuesta, N Furnham, GL Holliday, JM Thornton
Nature methods 11 (2), 171-174, 2014
842014
Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies
N Furnham, I Sillitoe, GL Holliday, AL Cuff, RA Laskowski, CA Orengo, ...
PLoS Comput Biol 8 (3), e1002403, 2012
802012
MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms
GL Holliday, DE Almonacid, GJ Bartlett, NM O'Boyle, JW Torrance, ...
Nucleic acids research 35 (suppl_1), D515-D520, 2007
782007
MACiE: exploring the diversity of biochemical reactions
GL Holliday, C Andreini, JD Fischer, SA Rahman, DE Almonacid, ...
Nucleic acids research 40 (D1), D783-D789, 2012
762012
Chemical markup, XML, and the world wide web. 6. CMLReact, an XML vocabulary for chemical reactions
GL Holliday, P Murray-Rust, HS Rzepa
Journal of chemical information and modeling 46 (1), 145-157, 2006
712006
Evolution of enzymes and pathways for the biosynthesis of cofactors
GL Holliday, JM Thornton, A Marquet, AG Smith, F Rébeillé, R Mendel, ...
Natural product reports 24 (5), 972-987, 2007
572007
Metal-MACiE: a database of metals involved in biological catalysis
C Andreini, I Bertini, G Cavallaro, GL Holliday, JM Thornton
Bioinformatics 25 (16), 2088-2089, 2009
542009
The chemistry of protein catalysis
GL Holliday, DE Almonacid, JBO Mitchell, JM Thornton
Journal of molecular biology 372 (5), 1261-1277, 2007
512007
The structures and physicochemical properties of organic cofactors in biocatalysis
JD Fischer, GL Holliday, SA Rahman, JM Thornton
Journal of molecular biology 403 (5), 803-824, 2010
482010
MACiE: a database of enzyme reaction mechanisms
GL Holliday, GJ Bartlett, DE Almonacid, NM O'Boyle, P Murray-Rust, ...
Bioinformatics 21 (23), 4315-4316, 2005
482005
Using reaction mechanism to measure enzyme similarity
NM O'Boyle, GL Holliday, DE Almonacid, JBO Mitchell
Journal of molecular biology 368 (5), 1484-1499, 2007
442007
[FeFe]-hydrogenase maturation: insights into the role HydE plays in dithiomethylamine biosynthesis
JN Betz, NW Boswell, CJ Fugate, GL Holliday, E Akiva, AG Scott, ...
Biochemistry 54 (9), 1807-1818, 2015
432015
Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites
AJM Ribeiro, GL Holliday, N Furnham, JD Tyzack, K Ferris, JM Thornton
Nucleic acids research 46 (D1), D618-D623, 2018
402018
Reaction Decoder Tool (RDT): extracting features from chemical reactions
SA Rahman, G Torrance, L Baldacci, S Martínez Cuesta, F Fenninger, ...
Bioinformatics 32 (13), 2065-2066, 2016
392016
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Artikelen 1–20