Connor T. Skennerton
Connor T. Skennerton
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Year
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
DH Parks, M Imelfort, CT Skennerton, P Hugenholtz, GW Tyson
Genome research 25 (7), 1043-1055, 2015
35262015
The khmer software package: enabling efficient nucleotide sequence analysis
MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ...
F1000Research 4, 2015
2582015
An expanded genomic representation of the phylum Cyanobacteria
RM Soo, CT Skennerton, Y Sekiguchi, M Imelfort, SJ Paech, PG Dennis, ...
Genome biology and evolution 6 (5), 1031-1045, 2014
2172014
Crass: identification and reconstruction of CRISPR from unassembled metagenomic data
CT Skennerton, M Imelfort, GW Tyson
Nucleic acids research 41 (10), e105-e105, 2013
982013
Expanding our view of genomic diversity in Candidatus Accumulibacter clades
CT Skennerton, JJ Barr, FR Slater, PL Bond, GW Tyson
Environmental microbiology 17 (5), 1574-1585, 2015
842015
Phage encoded H-NS: a potential achilles heel in the bacterial defence system
CT Skennerton, FE Angly, M Breitbart, L Bragg, S He, KD McMahon, ...
PloS one 6 (5), e20095, 2011
662011
Phylogenomic analysis of Candidatus ‘Izimaplasma’species: free-living representatives from a Tenericutes clade found in methane seeps
CT Skennerton, MF Haroon, A Briegel, J Shi, GJ Jensen, GW Tyson, ...
The ISME journal 10 (11), 2679-2692, 2016
592016
Methane-fueled syntrophy through extracellular electron transfer: uncovering the genomic traits conserved within diverse bacterial partners of anaerobic methanotrophic archaea
CT Skennerton, K Chourey, R Iyer, RL Hettich, GW Tyson, VJ Orphan
MBio 8 (4), e00530-17, 2017
472017
Genomic reconstruction of an uncultured hydrothermal vent gammaproteobacterial methanotroph (family Methylothermaceae) indicates multiple adaptations to oxygen limitation
CT Skennerton, LM Ward, A Michel, K Metcalfe, C Valiente, S Mullin, ...
Frontiers in microbiology 6, 1425, 2015
382015
Metagenomic and metaproteomic analyses of Accumulibacter phosphatis‐enriched floccular and granular biofilm
JJ Barr, BE Dutilh, CT Skennerton, T Fukushima, ML Hastie, JJ Gorman, ...
Environmental microbiology 18 (1), 273-287, 2016
332016
In-solution fluorescence in situ hybridization and fluorescence-activated cell sorting for single cell and population genome recovery
MF Haroon, CT Skennerton, JA Steen, N Lachner, P Hugenholtz, ...
Methods in enzymology 531, 3-19, 2013
252013
Proteomic stable isotope probing reveals biosynthesis dynamics of slow growing methane based microbial communities
JJ Marlow, CT Skennerton, Z Li, K Chourey, RL Hettich, C Pan, VJ Orphan
Frontiers in microbiology 7, 563, 2016
232016
Comparative genomics and proteomic analysis of assimilatory sulfate reduction pathways in anaerobic methanotrophic archaea
H Yu, D Susanti, SE McGlynn, CT Skennerton, K Chourey, R Iyer, ...
Frontiers in microbiology 9, 2917, 2018
102018
Photosynthesis is not a universal feature of the phylum Cyanobacteria
RM Soo, CT Skennerton, Y Sekiguchi, M Imelfort, SJ Paech, PG Dennis, ...
PeerJ PrePrints, 2014
42014
Phage-host Evolution in a Model Ecosystem
C Skennerton
12013
Sulfate differentially stimulates but is not respired by diverse anaerobic methanotrophic archaea
H Yu, CT Skennerton, GL Chadwick, AO Leu, M Aoki, GW Tyson, ...
The ISME Journal, 1-11, 2021
2021
Physiological, genomic, and sulfur isotopic characterization of methanol metabolism by Desulfovibrio carbinolicus
MS Sim, CT Skennerton, VJ Orphan
Plos one 16 (1), e0245069, 2021
2021
Leveraging the Second Genome platform to develop microbiome-derived cancer immunotherapies
D Haria, J Ravichandar, L Yamamoto, CE Chow, B Raja, J Dreux, ...
JOURNAL FOR IMMUNOTHERAPY OF CANCER 7, 2019
2019
Multi-technology Meta-analysis Identifies Bacterial Signatures Delineating Clinical Response to Immune Checkpoint-Inhibitor Therapy in Melanoma Cohorts.
JD Ravichandar, CE Chow, C Skennerton, D Haria, E Rutherford, H Kiefel, ...
AMIA, 2019
2019
Systems Level Dissection of Anaerobic Methane Cycling: Quantitative Measurements of Single Cell Ecophysiology, Genetic Mechanisms, and Microbial Interactions
V Orphan, G Tyson, C Meile, S McGlynn, H Yu, G Chadwick, J Marlow, ...
California Institute of Technology (CalTech), Pasadena, CA (United States), 2017
2017
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