| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular Systems Biology 16 (8), e9110, 2020 | 225 | 2020 |
| SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ... BMC systems biology 7 (1), 135, 2013 | 195 | 2013 |
| Quantum compass model on the square lattice J Dorier, F Becca, F Mila Physical Review B 72 (2), 024448, 2005 | 143 | 2005 |
| Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes F Benedetti, J Dorier, Y Burnier, A Stasiak Nucleic acids research 42 (5), 2848-2855, 2014 | 130 | 2014 |
| Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes D Racko, F Benedetti, J Dorier, A Stasiak Nucleic acids research 46 (4), 1648-1660, 2018 | 105 | 2018 |
| KnotProt 2.0: a database of proteins with knots and other entangled structures P Dabrowski-Tumanski, P Rubach, D Goundaroulis, J Dorier, P Sułkowski, ... Nucleic acids research 47 (D1), D367-D375, 2019 | 99 | 2019 |
| Cell-autonomous inflammation of BRCA1-deficient ovarian cancers drives both tumor-intrinsic immunoreactivity and immune resistance via STING M Bruand, D Barras, M Mina, E Ghisoni, M Morotti, E Lanitis, N Fahr, ... Cell reports 36 (3), 2021 | 92 | 2021 |
| Cooperative development of logical modelling standards and tools with CoLoMoTo A Naldi, PT Monteiro, C Müssel, Consortium for Logical Models and Tools, ... Bioinformatics 31 (7), 1154-1159, 2015 | 90 | 2015 |
| Theory of magnetization plateaux in the Shastry-Sutherland model J Dorier, KP Schmidt, F Mila Physical review letters 101 (25), 250402, 2008 | 87 | 2008 |
| Topological origins of chromosomal territories J Dorier, A Stasiak Nucleic acids research 37 (19), 6316-6322, 2009 | 81 | 2009 |
| Supersolid phase induced by correlated hopping in spin-1/2 frustrated quantum magnets KP Schmidt, J Dorier, AM Läuchli, F Mila Physical review letters 100 (9), 090401, 2008 | 81 | 2008 |
| CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions A Kaushal, G Mohana, J Dorier, I Özdemir, A Omer, P Cousin, ... Nature Communications 12 (1), 1-16, 2021 | 79 | 2021 |
| Topological Models for Open-Knotted Protein Chains Using the Concepts of Knotoids and Bonded Knotoids D Goundaroulis, N Gügümcü, S Lambropoulou, J Dorier, A Stasiak, ... Polymers 9 (9), 444, 2017 | 74 | 2017 |
| Studies of global and local entanglements of individual protein chains using the concept of knotoids D Goundaroulis, J Dorier, F Benedetti, A Stasiak Scientific reports 7 (1), 6309, 2017 | 71 | 2017 |
| Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method J Dorier, I Crespo, A Niknejad, R Liechti, M Ebeling, I Xenarios BMC Bioinformatics 17 (1), 410, 2016 | 57 | 2016 |
| The SIB Swiss Institute of Bioinformatics" resources: focus on curated databases LA Bultet, J Aguilar-Rodriguez, CH Ahrens, EL Ahrne, N Ai, L Aimo, ... Nucleic Acids Research 44 (EPFL-ARTICLE-217833), D27-D37, 2016 | 51 | 2016 |
| DNA supercoiling inhibits DNA knotting Y Burnier, J Dorier, A Stasiak Nucleic acids research 36 (15), 4956-4963, 2008 | 51 | 2008 |
| Single-particle versus pair condensation of hard-core bosons with correlated hopping KP Schmidt, J Dorier, A Läuchli, F Mila Physical Review B 74 (17), 174508, 2006 | 51 | 2006 |
| Solids and supersolids of three-body interacting polar molecules on an optical lattice KP Schmidt, J Dorier, AM Läuchli Physical review letters 101 (15), 150405, 2008 | 50 | 2008 |
| A single-cell morpho-transcriptomic map of brassinosteroid action in the Arabidopsis root M Graeff, S Rana, JR Wendrich, J Dorier, T Eekhout, ACA Fandino, ... Molecular Plant 14 (12), 1985-1999, 2021 | 47 | 2021 |
Andrzej StasiakUniversity of Lausanne, SwitzerlandVerified email at unil.ch
